Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0024 ATGAGGAGGAAGAATGCTACTACGAAAACGAATCCGGTTAGAATGGCGAACACTATCCACGTCGTTTCGAAGGACGATATCACGTTTGCTCAAGAAATTTTCGGATCATCTGTCCTTACGCACTTCTCTTCTGAGAATCTATTGAAAGGGTGCTTGCCAAAGGTTCTTGAAGGGTTAAGGAGAGAGTGCCGCACTTGGCGAGGAAGACCCTTGAGGCTGGTTGTCTGGGCAAGGGGGGTCGTGCCAAGGAGATGTGGGGGCAAGGATGTGAGCATTGAGAACATGCATCAAGGTTTCACTCATGTCTTCGAGTCAACCTTCGAGAGTGTGGAAGGCATTGCAGAGTATGTATCTCATCCAGCCCATGTCGAATTCGCAAATCTGTTCCTGCCCCACCTGGAGAAAGTCATTGTTTTCGACTACAAGCCCATTACAGTCCATCTCTGA 447 0.4855 MRRKNATTKTNPVRMANTIHVVSKDDITFAQEIFGSSVLTHFSSENLLKGCLPKVLEGLRRECRTWRGRPLRLVVWARGVVPRRCGGKDVSIENMHQGFTHVFESTFESVEGIAEYVSHPAHVEFANLFLPHLEKVIVFDYKPITVHL* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0024 148 ProSiteProfiles Stress-response A/B barrel domain profile. 39 141 IPR013097 -
Vvi5g0024 148 SMART Dabb_2 39 143 IPR013097 -
Vvi5g0024 148 PANTHER - 8 145 IPR044662 -
Vvi5g0024 148 SUPERFAMILY Dimeric alpha+beta barrel 86 144 IPR011008 -
Vvi5g0024 148 Gene3D - 27 148 - -
Vvi5g0024 148 Pfam Stress responsive A/B Barrel Domain 87 142 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0024 Vvi-Chr5 223761 236522 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0024 - - vvi:100255022 130.954