Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0020 ATGGAAAAGCTTGCATTTGTTGGACAGTTATGTTTCAGAAACAGAGAGAAGGCATGCTATTCCATCACAAGCACAACACCATATATATTGGCAGGTCTTGCTTCTGCCGTGGGTGGGTTGAGTGCACCATACGAAAAGGCTTCTCATGTACATGCAAGACCGATCGTGAATTGGCTCTGGTCAGCTGGTTGTCATCCGTTTGGACCATTCTCCAATACTTCCCAGATGAGTCAAATGCTCCAGGATGTTGCCTTGAGGAACACGATATACGCTCGTGTAGATTCTGCACTACACAGAATTCGGGATACATCAGAGTATGTACAAACTTTTGCTGCTGAATATCTGAAAACCCCACTTAGTGAACCAGTCAAGGGCAAGAAAAATAAGTCGAGCACTGAGCTATGGTTGGAAAAGTTCTACAAGAAGAAAACTAACTTGCCTGAACCTTTACCTCACGAATTAGTTGAAAGACTAGAGAAATTCTTGGATAATCACAACGGCTGCCCGGCCGAAAATCGTGTCAAAGATCTCCGCAGCTTTTACGTGGGATTCCCAAGCGGCGTCTCCGGAGATGAGGAGGCGATCGGGTCGATGATGTCGGTGGCGGATTCGAATAAGGATGGGTTTGTGGGGTACGATGAGTTTGAACACGTGTTGGGCTGCCGGAGAAGTCCGAGGAACAAGGGCCACGGCGTCGCTGGGGTGATGGAGGATGTGTGTAAGGTTATGGACAGGGACGGCGACGGCAAAGTAGGGCTCGAGGATTTGAAGAGCTATATGAATTGGGCCGGGTTTTCTGCAACTGAGGAAGAAATCAAGGCCATGATCAAATTGGGCGGCGGTGATGAAGATAGTGGTGTATCCTATGATGGTTTGCTCAAGATCCTGGCCGTTGATTATGTTAACTAA 909 0.4763 MEKLAFVGQLCFRNREKACYSITSTTPYILAGLASAVGGLSAPYEKASHVHARPIVNWLWSAGCHPFGPFSNTSQMSQMLQDVALRNTIYARVDSALHRIRDTSEYVQTFAAEYLKTPLSEPVKGKKNKSSTELWLEKFYKKKTNLPEPLPHELVERLEKFLDNHNGCPAENRVKDLRSFYVGFPSGVSGDEEAIGSMMSVADSNKDGFVGYDEFEHVLGCRRSPRNKGHGVAGVMEDVCKVMDRDGDGKVGLEDLKSYMNWAGFSATEEEIKAMIKLGGGDEDSGVSYDGLLKILAVDYVN* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0020 302 SMART efh_1 194 222 IPR002048 GO:0005509
Vvi5g0020 302 SMART efh_1 235 263 IPR002048 GO:0005509
Vvi5g0020 302 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Vvi5g0020 302 PANTHER TRANSMEMBRANE PROTEIN-RELATED 24 183 - -
Vvi5g0020 302 ProSiteProfiles EF-hand calcium-binding domain profile. 231 266 IPR002048 GO:0005509
Vvi5g0020 302 CDD EFh 241 297 IPR002048 GO:0005509
Vvi5g0020 302 ProSiteProfiles EF-hand calcium-binding domain profile. 190 225 IPR002048 GO:0005509
Vvi5g0020 302 ProSitePatterns EF-hand calcium-binding domain. 244 256 IPR018247 -
Vvi5g0020 302 Gene3D - 141 300 - -
Vvi5g0020 302 SUPERFAMILY EF-hand 164 297 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0020 Vvi-Chr5 170089 173540 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0020 176 297 EF-hand Containing Proteins AT5G49480 58.197 1.62e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0020 - K02183 vvi:100255097 289.271