Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0017 ATGACGGCTACATGTGACCCACGCCATGGCAAGTACATAGCAAGCTGTATGATATACCGAGGTGATGTGGCGCCCAAGGGCGTGAATGCAGCTGTGGCCATCGTCAAGATAAAACGCATTATCCAGCTTGTTGATTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTACCAGCCACCAATTGTTGTTCCTAGAAGGTATCATTGTAGAAAACGTGCCATTATGCTGACATCAACATCAGTGGAATCAATGGAGAAGTGA 261 0.4674 MTATCDPRHGKYIASCMIYRGDVAPKGVNAAVAIVKIKRIIQLVDWCPTGFKCGINYQPPIVVPRRYHCRKRAIMLTSTSVESMEK* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0017 86 Gene3D - 1 80 IPR037103 -
Vvi5g0017 86 PRINTS Alpha-tubulin signature 21 42 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi5g0017 86 PRINTS Alpha-tubulin signature 47 60 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi5g0017 86 Pfam Tubulin C-terminal domain 3 81 IPR018316 -
Vvi5g0017 86 PANTHER TUBULIN 1 80 IPR000217 GO:0005874|GO:0007017
Vvi5g0017 86 SUPERFAMILY Tubulin C-terminal domain-like 1 77 IPR008280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0017 Vvi-Chr5 128927 129187 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0017 K07374 - sind:105162465 116.316