Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1560 ATGTCTTTCTCTTTAGGAGCCTTTTGTGGAGACGGACAATCCACAATAAGACTGGCCTCAGTGAGGTGGCTGAATAACCTGAAAAAAATTCTATTCCAAGCTAGTCTCCTTTGGTTTCAGATTGAAAATATTCAATTAGGGGCTGCTTCAAGTGGGAATTATCTTGATGGTTGCTTGGATGTGCTTGTCAGCAACTTTATGCCCCCTTATTCTTTCCTAGATTTACTGAAGCAGTCACGTGGTCTTGCAAGAAAAGACCAAGTTCTTTCACGGGTGCATTCAACATCGGAAGATATTTCTGATCTGGTGCCTCTAGTCCCCTCAAGACTAGTGCCGAAAGTAATCCAGAGAATGCCTAATGTGTTTACTGAGGAACCTTTGATTGTGCTACATGTGGAGAACATGTTAAGGTTGGAGAGTGGTGCAATTCAAGAACTTGTTGGGAAAATGATGCTTGTGGCAATGATGGATAGGCTGGTAGACTTGGATGTAGAGATTGCATGGGAGGAAATCTTACAAGATGACTACAGCCAAGGGATGTTTGAGATGAGCTAG 555 0.427 MSFSLGAFCGDGQSTIRLASVRWLNNLKKILFQASLLWFQIENIQLGAASSGNYLDGCLDVLVSNFMPPYSFLDLLKQSRGLARKDQVLSRVHSTSEDISDLVPLVPSRLVPKVIQRMPNVFTEEPLIVLHVENMLRLESGAIQELVGKMMLVAMMDRLVDLDVEIAWEEILQDDYSQGMFEMS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1560 184 PANTHER TRANSCRIPTION INITIATION FACTOR IA RRN3 44 183 IPR007991 GO:0001181|GO:0006361
Vvi4g1560 184 Pfam RNA polymerase I specific transcription initiation factor RRN3 48 169 IPR007991 GO:0001181|GO:0006361
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1560 Vvi-Chr4 23624397 23627302 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1560 K15216 - vvi:100248166 224.557