Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1554 ATGGATGTTCGCCGGCGACCTCCGATGAGGTCAGTCCGGCAATCATCAACGACCTCGGCAGGCGAACCTCCAGTGAAGCATCTTAAACCCTCGGATGCACTGCCACTGCCTCTCTACCTTACAAATGGGATATTCTTCGCCTTGTTTTTCTCCGTGGCCTACTTCCTCCTCCACCGTTGGAGGGAGAAGATCCGTACGTCAACTCCTCTGCATGTTCTCACCCTCTCTGAAATCGCTGCCATCGTTTCCATGCTGGCGTCTGTTATCTATCTGTTGGGTTTCTTTGGCGTGGACTTCGTCCAATCTTTGGTCACCCGGCCTTCGGGTGATGTTTGGGACGCGGAAGACGAGCCCCACGGCGCCATCCTCGAGGAAGACAGTCGACCCGGGCCTTGCGCGGCAGCCATTGATTGTTGTCCGCCTCCGAAGGTGGCCGATGTTGCTCCTGTGACGGTTTTTTCGTCAGAGGAGGAAGAGGAGATGATCAGATCGGTGGTGGCGGGGTCTGTTCCATCCTACTTGCTCGAGTCAAAACTGGGTGATTGTAAGAGAGCGGCAGCGATCAGAAGGGAGGCCTTGCAGAGGACCACAGGGAGGTCTCTGGCGGGGCTGCCCTTGGATGGGTTCGACTACGAGGCGATACTGGGGCAGTGTTGCGAGATGCCGGTTGGGTACGTGCAGATTCCTGTGGGGATAGCGGGGCCGCTGCTGCTGGACGGAAGGGAGTACTGGGTGCCAATGGCGACGACGGAAGGGTGTCTGGTGGCAAGTACCAACAGGGGGTGTAAGGCCATTTTCACTTGTGGAGGAGCCAGTTCCATGGTGTTGAGGGACCGCATGACCAGGGCTCCCGTTGTCAGGTTTCCCACCGCCAGCAGGGCTGCCGACTTGAAGCTCTTTGTCGAGGACCCTATCAATTTCGACACTCTGGCCGTTGTTTTCAACAGGTCAAGCAGATTTGCAAGGCTGCAAGGCATCCATTGCGCCATTGCAGGGAAGAATCTGTACATGAGGTTTGGCTGCAGCACTGGTGATGCAATGGGTATGAACATGGTCTCCAAAGGAGTCCAAAACGTCCTGGATTTCCTTCAAACCGATTTCCCTGACATGGATGTCATCGGCATCTCCGGAAACTTCTGTTCAGACAAGAAGCCAGCTGCAGTGAACTGGATTGAAGGGCGTGGGAAGTCGGTTGTATGCGAGGCAATAATTGGGGATGAGGTTGTGAGGAAGGTGTTGAAGACCAGTGTGGCTGCTCTGGTGGAGCTTAACATGCTCAAGAACCTTACAGGGTCAGCAGTGGCTGGCGCCCTTGGGGGCTTCAATGCCCATGCCAGCAATATTGTCTCTGCAGTTTATATAGCAACTGGCCAGGATCCTGCTCAGAATGTAGAGAGCTCCCACTGCATCACGATGATGGAAGCTGTGAATGATGGGAAGGACCTTCATATCTCAGTCACCATGCCTTCCATTGAGGTGGGTACGGTGGGAGGTGGCACCCAACTGGCATCTCAGTCAGCTTGCCTGAACCTACTAGGTGTAAAGGGTGCAAGCAAAGAGTCTCCAGGGTCAAACTCAAGGCTCTTGGCCACCATTGTAGCTGGTTCTGTTCTTGCTGGAGAACTCTCCCTCATGTCCGCCATTGCAGCCGGCCAGCTTGTCAAGAGCCACTTGAAATATAACAGATCCAGCAGAGATGTCTCTAAAATTGCTTCCTAA 1719 0.5451 MDVRRRPPMRSVRQSSTTSAGEPPVKHLKPSDALPLPLYLTNGIFFALFFSVAYFLLHRWREKIRTSTPLHVLTLSEIAAIVSMLASVIYLLGFFGVDFVQSLVTRPSGDVWDAEDEPHGAILEEDSRPGPCAAAIDCCPPPKVADVAPVTVFSSEEEEEMIRSVVAGSVPSYLLESKLGDCKRAAAIRREALQRTTGRSLAGLPLDGFDYEAILGQCCEMPVGYVQIPVGIAGPLLLDGREYWVPMATTEGCLVASTNRGCKAIFTCGGASSMVLRDRMTRAPVVRFPTASRAADLKLFVEDPINFDTLAVVFNRSSRFARLQGIHCAIAGKNLYMRFGCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIGDEVVRKVLKTSVAALVELNMLKNLTGSAVAGALGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHLKYNRSSRDVSKIAS* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1554 572 Gene3D - 279 395 IPR009023 -
Vvi4g1554 572 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 158 562 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 Pfam Hydroxymethylglutaryl-coenzyme A reductase 186 562 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g1554 572 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 279 395 IPR009023 -
Vvi4g1554 572 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 338 352 IPR023076 GO:0004420
Vvi4g1554 572 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 279 395 - -
Vvi4g1554 572 Gene3D - 229 557 IPR023074 GO:0004420
Vvi4g1554 572 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 153 551 IPR009029 GO:0015936|GO:0016616
Vvi4g1554 572 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 154 228 - -
Vvi4g1554 572 CDD HMG-CoA_reductase_classI 159 562 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vvi4g1554 572 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 158 562 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vvi4g1554 572 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 493 500 IPR023076 GO:0004420
Vvi4g1554 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 376 401 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 427 453 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 336 354 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 481 502 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 245 265 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 218 239 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 547 560 IPR023076 GO:0004420
Vvi4g1554 572 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 26 565 IPR002202 GO:0004420|GO:0015936
Vvi4g1554 572 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 384 557 - -
Vvi4g1554 572 Gene3D - 149 228 IPR023282 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1554 Vvi-Chr4 23597424 23599575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1554 1 568 Lipid Metabolism Gene Families AT1G76490 72.194 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1554 K00021 - vvi:100243051 1118.61