Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1543 ATGGGAACTTCAATGGATCCTGACTATCGACATAGGGGGCAATTGCCTTACATAGCCGATAATTTCAACTCTTTGGATCAGGTTACTGATGCATTGAGAGAATCTGGCCTTGAATCATCAAACTTAATTCTTGGTATCGACTTCACAAAGAGCAATGAGTGGACAGGCAGGCATTCATTCCATAGGAAAAGCCTTCATGCGATTAGTAACACACCTAACCCATATGAACAAGCAATCTCTATAATTGGCCGAACTCTGTCTCCTTTTGATGAAGACAACTTGATACCTTGCTTCGGATTTGGTGATGCATCAACACACGATAAGTATGTTTTCAGCTTTTACCCTGATCACCGATATTGTCGTGGTTTTGAGGAGGTTCTGGCACGATATAAAGAGATTGTTCCGTACTTGAAGTTGTCAGGTCCAACTTCCTTTGCCCCGATAATCGATGCAGCTATTGACATTGTGGAGGGAAGCAACGGGCAATATCATGTTCTTGTCATTATTGCAGATGGGCAGGTTTCCGGTAGTCTTGATGGATCATCTGGAAGGTTTAGTCCACAAGAACAAGCAACTGTAAATTCTATAGTTGCGGCTAGCCGATATCCTCTCTCGATTATTTTGGTCGGTGTGGGAGATGGACCGTGGGATGCAATGAAATTATTTGATGATAACATTCCTCAACGCTCATTTGACAACTTCCAGTTTGTCGACTTCTCAAAGATCATGTCCGAGAACATGGAAGCATCAAAGAAGGAAACAGCCTTTGCACTTTCGGCCCTAATGGAAATCCCATTTCAGTACAGAGCCACCCTGAGGCTGCAGTCAATCGATAATAATTTAGTGGGTGGTCCACGTACAAGGCCGCTTCCACCTCCACAAGAAGTGTTGGATCATGATAGGGAGGCATTGCAGCACATGATGGCCACCACCCTATCCGTGGAGGCTGTGGAGCAAACAGCCCCAGTGGATCAGGTAAGTTTTTAA 987 0.4448 MGTSMDPDYRHRGQLPYIADNFNSLDQVTDALRESGLESSNLILGIDFTKSNEWTGRHSFHRKSLHAISNTPNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDKYVFSFYPDHRYCRGFEEVLARYKEIVPYLKLSGPTSFAPIIDAAIDIVEGSNGQYHVLVIIADGQVSGSLDGSSGRFSPQEQATVNSIVAASRYPLSIILVGVGDGPWDAMKLFDDNIPQRSFDNFQFVDFSKIMSENMEASKKETAFALSALMEIPFQYRATLRLQSIDNNLVGGPRTRPLPPPQEVLDHDREALQHMMATTLSVEAVEQTAPVDQVSF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1543 328 SMART VWA_4 39 242 IPR002035 -
Vvi4g1543 328 PANTHER COPINE FAMILY PROTEIN 1 15 301 - -
Vvi4g1543 328 Pfam Copine 64 278 IPR010734 -
Vvi4g1543 328 SUPERFAMILY vWA-like 40 222 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1543 Vvi-Chr4 23278194 23287284 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1543 K16280 - vvi:100249896 656.751