Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1540 ATGAAAATTCTGATTAAAAGAAGGGTAAACTCCACTCATGTAGGTCTGTTGATCCGCTTGTTCAGGGCTTCCGGAATTGTGCAAGAACAACTTGGGCATCCCATATGGGGCTCCTATGCACAACGGTTGTTGGACCCTGGGGCAGGACTCTGGAGAAACCCTAGTAATGGTGGCCATGATGATAAAGCCCACCCACCCATTCACCCAACAAAATTCTCTGCTGGAGAATCTGGATGGAGTCAAGACCACCAGAGATTGTATGAGTTGGTTGTTCGCCATTTCTTGGCATGCGTTTCACAGCCAGCTGTAGGTGCTGAGACAATTGTTGAAATTGATATTGCCGGTGAATCATTTTCTTCATCAGGGAGAGTGATAATAGCTAAAAATTACCTAGATGTTTACCGGTTTGAATCATGGGGAGGCTCTATGATCCCAACATATGTCTTTGGACAACAGTTTATTCCAACAACATTGACTCTTGATTCTGGAGTTACTAGACCACCCCCACTTTTAAGTGAAGCTGATTTGCTAAACTGCATGGACAAGGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAAATCTTGGTGAAGCGCTGGTAATGGGTTATGATGACATGGGGTATGAACTCTGGAAACCATATCTTAGATCAATGATGGAATGTGACATGAAAGCAGTCAGTATAGGCACAAAAAGGAGAAATGAAGTTTTAACAACTTGCTTGGAGCAGATGAAAGCTTGCTTTTTAGATGCAAGGCTGAACAAAGTAAAACTCTTAGAAGCCATGGCACTTTTCTTTGAGAGATCTAATAGATCTAGTGGGGATGAGCAGCATGAAGTTGGAGATGTTGTTCGACAATGCACTCTTTGCCAGGAATCAGATATGGTCCTGAGGCGAAAACCAGATGGCAATTTCATGGTTGGATGCTTGGGTTATCCACAGTGTAGGAATGTTGTCTGGCTTCCTGGATCCATATCAGAAGCAGCCATTACCACTATTTCTTGTAACCATTGTACTCCAGGTCCTGTTTACAAGATTCAATTTAAGTTTCGCCGGCTAGAAATTCCACCGAATTACAATATCGATCATTTGGGTTGTGTTTGTGGCTGTGATGAGATTCTTAGACAGTTGACAGAAATTTGCGGAACTGGCTCCCGCATTTCAGCAAGAGGGCGAGGATCAAATGCATCTTCCACCAATGCACAACGAAGTAATACTAGGCAGACTGCTTGCATTCACTGCAGCCAAACAGGGCATTCTTCAAATGATTGCCCTTCTCGGGTTCCGCGCTCTCGGAATTCTCAGTCTCATCGAACAAATATGCCAAGCGGTACACTGCTGAACTAG 1413 0.4374 MKILIKRRVNSTHVGLLIRLFRASGIVQEQLGHPIWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESGWSQDHQRLYELVVRHFLACVSQPAVGAETIVEIDIAGESFSSSGRVIIAKNYLDVYRFESWGGSMIPTYVFGQQFIPTTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRFYATKDSNTRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARLNKVKLLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSRISARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSRVPRSRNSQSHRTNMPSGTLLN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1540 470 Pfam Topoisomerase DNA binding C4 zinc finger 307 344 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Vvi4g1540 470 Gene3D Topoisomerase I, domain 4 10 100 IPR013826 -
Vvi4g1540 470 PANTHER PROKARYOTIC DNA TOPOISOMERASE 23 441 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vvi4g1540 470 SMART topIaneu2 5 222 IPR003602 GO:0003677|GO:0003916|GO:0006265
Vvi4g1540 470 MobiDBLite consensus disorder prediction 438 470 - -
Vvi4g1540 470 Gene3D Bacterial Topoisomerase I, domain 1 295 346 - -
Vvi4g1540 470 Gene3D - 410 463 - -
Vvi4g1540 470 Pfam DNA topoisomerase 39 259 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g1540 470 SUPERFAMILY Retrovirus zinc finger-like domains 416 453 IPR036875 GO:0003676|GO:0008270
Vvi4g1540 470 FunFam DNA topoisomerase 21 100 - -
Vvi4g1540 470 SUPERFAMILY Prokaryotic type I DNA topoisomerase 39 314 IPR023405 -
Vvi4g1540 470 Gene3D Topoisomerase I, domain 2 143 291 IPR013824 -
Vvi4g1540 470 ProSiteProfiles Zinc finger CCHC-type profile. 433 448 IPR001878 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1540 K03165 - vvi:100248256 914.45