Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1538 ATGGCGTTGAGAGTGGGGCATAGTCGCTGCATCTCCACCTCTATTGCACTCAAACTCCAATTTTTTTCTATTACACCCTGCCACTTCTCATCCATCCCCCAACCCCCAGACGACGCCCTTTCCACAGGTCTTCCTTCCCTCCAGCCTTCATATGACGCTGATTTGATCTCCAAAATCCTCCTTCAACACCACAACCCTTTCCACGCTATGGAGTCCTCTCTTCAGCTCAACGGCATCGCCCTCTCCACTCACCTCGTTCACCAGACCCTTCTCCGCCTCAGAAACGTCTCCAAAATTGCCCTCTCCTTCTTCCTGTGGGCCAAGGACCAAGCCCATCATAGCCACGACGTTGTTTCCTACAACCTCATTATCGACATTCTCGCAAAAGTTCGGCAATTCGACGTTGCCTGGCAGTTCATCATCGAAATGGATCAAAATTCCCTGGAACCCACCTCTACTACCTTCCGTATTTTGATTCGGAGGTCGGTTTCGGCTGGGCTCACGCGCCAAGCTGTTCGGGCGTTTGATGACATGAGTTGTTTTGTCGAGAAGGATGCGGATTCTGATGATTTTTGTTATCTGCTCGATACCCTCTCTAAGTATGGGTATGTGAAGCTTGCTTCACAGATTTTTAATCAAAGGAAGTTCAAATTCGAGGCTAATGCCAAAATGTATACTATTTTGATATATGGGTGGTGTAAGATTAACCGAGTTAGCATAGCGGAGAGGCTGCTTGGTGAGATGGTAGAACGTGGGATTGAGGCGAATGTTGTTACATATAATGTGCTTTTGAATGGGATTTGCAGGAGGGCGAGTTTGCACCCTGATGACAGGTTTGAGAGGACAATTCGGGATGCAGAGAAGGTGCTCGATGAAATGCGCCAAAAGGGGATTGAGCCTGACGTAACAAGCTATTCCATTGTTATTCATGTGTATAGTAGGGCTCATAAACCTGAGTTGACACTTGATAAGTTGCGGATGATGAAAGATAAAGGGATATGGCCAACCGTGGCAACTTATACATCAGTGGTTAAGTGCCTTTGTTCATGTGGGAGACTTGAAGATGCTGAGGAGTTGGTTTCTGACATGGTGAAGGATGGGGTTAGTCCATCAGCTGCAACATACAACTGTTTCTTCAAAGAGTATAGGGGGAGGAAAGATTCAGATAATGCTTTGAGGTTGTATAGGAAGATGAAGGAAGAATATTCATGCTTGCCTGATATGCACACTTATAACATATTAGTGGGAATGTTTGTGAAGTTGAACCGCATGGAGATTGTGCAAGAGATATGGGATGATATGAAAACGAGTGGGGCAGGACCAGATTTGGATTCATATACACTGTTGATCCATGGGTTATGTGAGAAACAGAAGTGGAAAGAAGCTTGCCATTTTTTTGTGGAGATGATAGAGAAGGGGTATCTTCCTCAGAAAATCACTTTTGAGACACTTTACCGGGGCTTAATACAATCTGATATGTTGAAAACCTGGAGGAGATTGAAGAAGAAGCTTGAGGAAGAGTCAATAACATTCGGTTCTGAATTCCAACAGTATCACTTCAAGCCCTACAGGAGATGA 1578 0.4512 MALRVGHSRCISTSIALKLQFFSITPCHFSSIPQPPDDALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGSEFQQYHFKPYRR* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1538 525 NCBIfam pentatricopeptide repeat 224 256 IPR002885 -
Vvi4g1538 525 NCBIfam pentatricopeptide repeat 339 371 IPR002885 -
Vvi4g1538 525 NCBIfam pentatricopeptide repeat 118 151 IPR002885 -
Vvi4g1538 525 NCBIfam pentatricopeptide repeat 445 476 IPR002885 -
Vvi4g1538 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Vvi4g1538 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Vvi4g1538 525 Pfam PPR repeat family 335 381 IPR002885 -
Vvi4g1538 525 Pfam PPR repeat family 116 160 IPR002885 -
Vvi4g1538 525 Pfam PPR repeat family 406 454 IPR002885 -
Vvi4g1538 525 Pfam PPR repeat family 221 269 IPR002885 -
Vvi4g1538 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vvi4g1538 525 Coils Coil 276 296 - -
Vvi4g1538 525 Gene3D Tetratricopeptide repeat domain 382 512 IPR011990 GO:0005515
Vvi4g1538 525 Gene3D Tetratricopeptide repeat domain 62 185 IPR011990 GO:0005515
Vvi4g1538 525 Gene3D Tetratricopeptide repeat domain 279 381 IPR011990 GO:0005515
Vvi4g1538 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Vvi4g1538 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vvi4g1538 525 Pfam PPR repeat 304 333 IPR002885 -
Vvi4g1538 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vvi4g1538 525 Gene3D Tetratricopeptide repeat domain 186 278 IPR011990 GO:0005515
Vvi4g1538 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 88 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1538 Vvi-Chr4 23141979 23143556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1538 120 510 Miscellaneous Gene Families AT4G11690 28.250 1.44e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1538 - - vvi:100265441 1063.52