Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1536 ATGCTTCCATGGTTGGCTCATGGTCACATATCTCCCTTCCTGGAGTTGGCTAAGAAGCTCTCAAGGAGAAACTTCTACATATATTTTTGTTCTACACCTGTTAATCTCGGTTGCATCAAAGGTAAACTCAACCAAGAAAACTCTCGTTCAATTCACTTGGTAGAACTCCATCTTCCATCCTCGCCTGACCTTCCTCCACACTACCACACAACCAATGGCCTCCCACCCCATCTCATGCCCACCCTCAAGAAGGCCTTTGATACGGCAAACCATAGCTTCGCCGACATCCTTAAATCTCTAAAACCAGATTTGCTTATATATGATATCCTCCAGCCATGGGCTCCAACTGCAGCTTCTTCCCTGGATATTCCTGCGATTCTGTTCTTCAGCACAGGAGCTGCCGTTCTCTCAATCATCCTCCATCTAGGTAAAAGACCCGGCACTGTATATCCTTTTCCCGAGATTTTCCATCTTCAGGATTTTCGGAGGACTACAGAGCTCAACCGTGTGACCGGTTCTGGAGCAAATAACATGAAAGATGAAGAACGGGCAGCTGAATGCTTGAAACAGTCCTCTAACGTTATTTTGATCAAGACTTTTAGGGAGATGGGGGGGAAATATATAGATTATATCTCTGCTTTATCTGAGAAGAAGCTTATTCCTGTAGGTCCACTTGTTGCGGACTCCACCGAGGAATTTGAGAATGCGGCAATCATTGATTGGCTTAACAAGAAGGACAAATTGTCAGCTGTACTTGTTTCCTTTGGCAGTGAGTATTTTATGTCCAAAGAGGAGATGGAAGAGATAGCTCATGGGCTAGAGCTCAGCAGGGTTAGCTTCATATGGGTGGTGAGGATTCTTCAGGGAAACAAAATTAACAATGCAGAAGAGGCACTACCAGAGGGGTATATCAGAAGAGTGGGAGAGAGAGGAATGGTTGTGGAAGGATGGGCTCCACAGAAAAAAATTCTAGGACACACTAGCATTGGGGGGTTTGTGAGTCATTGTGGATGGAGTTCTATAATGGAAAGCATCAAGTTCGGTGTTCCAATTGTGGCCATTCCCATGCAAATTGATCAGCCCTTTAATGCTAAACTGTTGGAGGCTGTTGGTGTGGGTGTGGAGGTTAAGAGAAATGAGGATAGGAGGCTTGAGAGAGAAGAGATAGCAAGAGTGATCAAAGAGGTGGTGGTTGAGAAATCTGGGGAAAATGTGAGGAGAAAAGTGAGAGAGATGAGTGAAAACATGAGAAAGAAAGCAGATGAAGAGATAGCCGAGGTAGCAGAGGAGCTGGTGCGACTCCGTAAACGAGATGTGGCAGCGGCATCATATTCATAG 1338 0.4529 MLPWLAHGHISPFLELAKKLSRRNFYIYFCSTPVNLGCIKGKLNQENSRSIHLVELHLPSSPDLPPHYHTTNGLPPHLMPTLKKAFDTANHSFADILKSLKPDLLIYDILQPWAPTAASSLDIPAILFFSTGAAVLSIILHLGKRPGTVYPFPEIFHLQDFRRTTELNRVTGSGANNMKDEERAAECLKQSSNVILIKTFREMGGKYIDYISALSEKKLIPVGPLVADSTEEFENAAIIDWLNKKDKLSAVLVSFGSEYFMSKEEMEEIAHGLELSRVSFIWVVRILQGNKINNAEEALPEGYIRRVGERGMVVEGWAPQKKILGHTSIGGFVSHCGWSSIMESIKFGVPIVAIPMQIDQPFNAKLLEAVGVGVEVKRNEDRRLEREEIARVIKEVVVEKSGENVRRKVREMSENMRKKADEEIAEVAEELVRLRKRDVAAASYS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1536 445 ProSitePatterns UDP-glycosyltransferases signature. 317 360 IPR035595 -
Vvi4g1536 445 Coils Coil 410 437 - -
Vvi4g1536 445 Gene3D Glycogen Phosphorylase B; 1 422 - -
Vvi4g1536 445 CDD GT1_Gtf-like 1 431 IPR002213 GO:0008194
Vvi4g1536 445 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 250 405 IPR002213 GO:0008194
Vvi4g1536 445 PANTHER GLYCOSYLTRANSFERASE 1 429 - -
Vvi4g1536 445 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 419 - -
Vvi4g1536 445 Gene3D Glycogen Phosphorylase B; 236 421 - -
Vvi4g1536 445 FunFam Glycosyltransferase 236 419 - -
Vvi4g1536 445 FunFam Glycosyltransferase 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1536 Vvi-Chr4 23119212 23120549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1536 1 406 Glycosyltransferase AT5G65550 34.579 1.96e-74 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1536 - - vvi:100255135 878.241