Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1535 ATGGCATCAAGAACCTCAACTGTTGTCATGGCTCCCCCATCGGAGGAGAAGCATGACGTTGGATTTTTAGTTTTTGACCCAAAGAAGATGGCAAAACAAGAGCTTCCCAAACAGTTCATTTGGCCAAATGAAGATTTAGTTGAGGCCAAGGAAGAGCTTAATGAACCCTTGGTAGACATGGAGGGATTCTTGAAAGGTGATGAGGTTGCAACTGCCCATGCTGCCGAGCTTGTTCGACAAGCTTGCGTAACCCACGGCTTCTTCCAAGTTATCAACCATGGGGTTAACCCAGATATTCTCCGTGCTACAGAGGTTGGATTGGATCCTTACTTCAATCTACCCATGAGCAGGAAGCTCAGCATGCATAAGAAGGTTGATGAGTTATGCGGATACTGTGGTGCCCATTCTGATCGGTTTGCTGCTAAGTTGACATGGAAGGAGATGCTCACTTTTGAATACCATTTTAAGGGTGATACTGACTCTGAGGTAGCTGACTACTTCAAAAATGTGGTAGGTGAAGATTTTGAGGAGACAGGGTGGGTTTTCCAAAGATTCTGTGAAGCCATGAAGGATTTATCTCTAAAGATTTTTAAACTCTTGGCAATAAGCTTGAACTTAGAAGATACTTCATACTGTGAGAAATTTTTTGAGGATGGTTTTGCAGTCTTGAGATGTAACTACTATCCAGTTTGCCCGGAATCTGGCCTTACCTTTGGCACTGGCCCTCATTGTGACCCGACCTCTTTAACAATACTTCATCAAGATCAAGTTGGAGGGCTTGAAGTATTTTCAAATGAAAAATGGTATTATGTCAAGCCTCAGCCTGGTGCTCTTGTGATTAACATCGGTGACACCCTCATGGCATTAACCAATGGAATATACAAGAGTTGTTTGCACAGGGCTGCGGCAAAAAATGACAGAGACAGGATATCATTCGCTTACTTTATTAGCCCAAGGCAGGACAAGCTGGTTTCACCCATAAAAGATCTTATTGCTAGAGAAGGCTCAAAGAAATACCCTGATTTCAAATGGGAACAACTTTTAGACTTCACCCAAGTCCATGATCGCACTGATGATACTACCATCAAACGCTTCGTGGAATTCCTTGAGTCATCGGAAACTAAATAA 1128 0.4291 MASRTSTVVMAPPSEEKHDVGFLVFDPKKMAKQELPKQFIWPNEDLVEAKEELNEPLVDMEGFLKGDEVATAHAAELVRQACVTHGFFQVINHGVNPDILRATEVGLDPYFNLPMSRKLSMHKKVDELCGYCGAHSDRFAAKLTWKEMLTFEYHFKGDTDSEVADYFKNVVGEDFEETGWVFQRFCEAMKDLSLKIFKLLAISLNLEDTSYCEKFFEDGFAVLRCNYYPVCPESGLTFGTGPHCDPTSLTILHQDQVGGLEVFSNEKWYYVKPQPGALVINIGDTLMALTNGIYKSCLHRAAAKNDRDRISFAYFISPRQDKLVSPIKDLIAREGSKKYPDFKWEQLLDFTQVHDRTDDTTIKRFVEFLESSETK* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1535 375 PRINTS Isopenicillin N synthase signature 278 304 - -
Vvi4g1535 375 PRINTS Isopenicillin N synthase signature 243 264 - -
Vvi4g1535 375 PRINTS Isopenicillin N synthase signature 78 95 - -
Vvi4g1535 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 318 IPR005123 -
Vvi4g1535 375 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 56 347 - -
Vvi4g1535 375 FunFam Gibberellin 20 oxidase 2 27 356 - -
Vvi4g1535 375 Gene3D - 27 356 IPR027443 -
Vvi4g1535 375 Pfam 2OG-Fe(II) oxygenase superfamily 221 318 IPR044861 -
Vvi4g1535 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 56 164 IPR026992 -
Vvi4g1535 375 SUPERFAMILY Clavaminate synthase-like 32 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1535 Vvi-Chr4 23110760 23112150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1535 34 341 Glycosyltransferase AT5G59530 29.697 4.80e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1535 K05282 - vvi:100249987 776.163