Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1534 ATGCTGCTGCTCCAAAAAACTCTTCCGTCCTTCACAGGCAGTTTAGTGTTATTGGTGCAGCATAATGTGTGCAAGTTGAAGAATCATGGAAGATTTGGTTCAGACACCAAATTTTCTGGGGATGGATATTTCCGGAAGCATTTGAAATCAGGAAGGAGATACTTCTCCAAAAGCAGAGGGCCTTTTGTTTCTTGTTCCCTTGTACCTTCAACTAGTGAGCTAAGCGATGCACGGGTGATTTATTGTGTAGCTCCTGCCATGGGCCATAACCAGGAGTCACATCCGGAATCTAATTTTAGGGTTCCTGCAATTGTGAGTGCTCTGGAAAAGATGGAACTGTCACCAATGTTCCGTGGCTCAGAGATCCTTGAACTTCATAGTTTCAGTCCTGCTTCAGTGGAAGATATAGCAAGTGTTCACACAAAGGCCTATGTATCAGGTCTTGAGAAGAGTATGGATCAGGCTTCACAGAAAGGAATTATTTACATTGATGGCTCTGGACCAACATATGCTACTGCAACTACTTTCCAAGAATCACTACTTGCAGCTGGAGCAGGAATCACCTTAGTTGATTCAGTGGTAGCAGCATCAAAGAGCAGCCAGGACCCACCAATGGGTTTTGCTTTGATAAGACCTCCAGGTCATCATGCAATTCCAAAAGGTCCTATGGGCTTTTGTGTTTTTGGAAATGTGGCCATTGCAGCTCGTTATGCCCAACGTGTACATGGATTAAAGCGTGTGTTTATCATTGATTTTGACGTTCATCATGGGAATGGAACAAATGATGCATTCTATGATGACCCAGATATATTCTTCCTTTCAACTCATCAAGATGGAAGCTACCCTGGTACTGGTAAAATTGATGAGGTAGGCCATGGCAGTGGTGAAGGAGCGACACTAAATTTGCCCCTACCAGGAGGCTCAGGTGATATTGCCATGAGGACTGTTTTTGATGAAGTCATTGTACCATCTGCCCAGAGGTTCAAGCCAGACATAATTCTCGTCTCAGCTGGTTATGATGGGCATGTATTGGATCCGCTAGCCAGTCTGCAATTTACTACTGGAACATACTACATGCTTGCATCTAACATTAAACAGCTCGCCAAAGATCTATGTGGGGGCCGCTGCGTATTTTTCCTGGAAGGAGGATACAACCTCAGCTCGCTTTCATATTCAGTGGCAGACTCATTTCGTGCTTTTCTTGGGGAGCCAAGTTTGGCATCTGAGTTTGATGACCCTGCCATCTTATATGAAGAGCCGTCCACTAAGGTGAAACAAGCAATTCAAAAAGTTAAACACTTACATTCCCTGTGA 1314 0.4422 MLLLQKTLPSFTGSLVLLVQHNVCKLKNHGRFGSDTKFSGDGYFRKHLKSGRRYFSKSRGPFVSCSLVPSTSELSDARVIYCVAPAMGHNQESHPESNFRVPAIVSALEKMELSPMFRGSEILELHSFSPASVEDIASVHTKAYVSGLEKSMDQASQKGIIYIDGSGPTYATATTFQESLLAAGAGITLVDSVVAASKSSQDPPMGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGHGSGEGATLNLPLPGGSGDIAMRTVFDEVIVPSAQRFKPDIILVSAGYDGHVLDPLASLQFTTGTYYMLASNIKQLAKDLCGGRCVFFLEGGYNLSSLSYSVADSFRAFLGEPSLASEFDDPAILYEEPSTKVKQAIQKVKHLHSL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1534 437 Gene3D Histone deacetylase domain 69 436 IPR037138 -
Vvi4g1534 437 PRINTS Histone deacetylase superfamily signature 330 340 IPR000286 -
Vvi4g1534 437 PRINTS Histone deacetylase superfamily signature 212 235 IPR000286 -
Vvi4g1534 437 PRINTS Histone deacetylase superfamily signature 246 261 IPR000286 -
Vvi4g1534 437 SUPERFAMILY Arginase/deacetylase 84 405 IPR023696 -
Vvi4g1534 437 CDD HDAC_classII 94 401 - -
Vvi4g1534 437 PANTHER HISTONE DEACETYLASE 2-RELATED 70 404 - -
Vvi4g1534 437 Pfam Histone deacetylase domain 94 398 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1534 Vvi-Chr4 23072459 23108432 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1534 - - vvi:100244854 878.241