Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1532 ATGGCTCTCCCTCTCGGAAAATCAAAACGTATTCTCCAATGTCTCAAATCGAAGATTTGTGTTGTGGGTCTTGGAAAAAACAGTTTTTGGAGTGGTTGGTTTCATCATGGTTGCCCATCCTCCATGGCTCCACTGGCTCCAACTTGCAGAAACCCAGATGCAGTTTTGGTTAATGCGGCAACCCAATTCGCAACTCGTCGTTTCGAATCCACCAAAGCTGAAAAACATGTGGATTCTCTTTGTGATGCTGAAGGCAATCAGCTCTTGGATTTTCCGGGAGGAAAGGTGGCATTCACCTCTGAAATGAGATTCATACCTGAATCCCCTATGGAGCGGGCACACTGCTACCGGGTCCTTGATGACAATGGTCAGCCAAATATGTCCAACTTTGTACAGGTTAGCAAGGAAGTTGCTGTAAAAATGTATGCTACCATGCTCACACTTCAAGTGATGGACACTATCTTCTATGAAGCACAAAGGCAAGGAAGAATTTCCTTCTACGTCACCTCCATCGGAGAAGAGGCCATCAATGTTGCTTCAGCGGCAGCACTCTCCATTGATGATGTCATCTTCCCTCAGTATAGGGAGCCAGGAGTTCTTCTATGGCGAGGTTTCACCCTGCAAGAATTTGCAAACCAGTGTTTTGGAAACAAAGCTGATTATGGGAAAGGCAGACAGATGCCCATCCATTACGGGTCTAACAAGCACAATTATGTCACTGTGTCATCAACAGTTGCGACACAAATTCCCCAGGCTGTTGGTGCTGCATATTCTTTGAAGATGGATGGGAAAGATGCATGCACAGTCACTTATTTTGGAGATGGAGGCTCAAGCACGGGAGACTTCCATGCTGCTTTAAATTTTGCTGCGGTTATGGAGGCCCCAGTTATTTTTATCTGTCGGAACAATGGGTGGGCCATCAGTACCCCTGTCTCAGACCAGTTTCGAAGTGATGGTGTTGTTGTTAGAGGACGGGGATATGGAGTTAGGAGCATCCGCGTAGATGGCAACGATGCTCTTGCTATGTACACTGCTGTTCATGCTGCACGCAAAATGGCAATCACTGAACATAGGCCCATCTTAATTGAGGCCCTCACATATCGAGCAGGACACCACTCCACATCAGATGATTCCTCCAAATATCGCCCGGTCAGTGAGATTGAATTGTGGAGAATGGCGAGAGATCCTGTAAGTAGACTCAGAAGATGGATTGAAAGTAATGACTGGTGGAGTGGTGAGGCTGAATCAGAGCTGAGAAGCAATGTGAGGAAGGAGGTCCTAGATGCAATTCAAGTAGCAGAAAGAGTTGAGAAGCCTCCAATTGCAGAGATTTTCACGGATGTGTATGATGCTCCCCCATCCAATCTTTGTGAGCAGGAGAAATTACTGAGAGAAACCATCAGAAGATACCCCCAGGATTATCCACCTGATGTACCTGCTCTTTAG 1446 0.4647 MALPLGKSKRILQCLKSKICVVGLGKNSFWSGWFHHGCPSSMAPLAPTCRNPDAVLVNAATQFATRRFESTKAEKHVDSLCDAEGNQLLDFPGGKVAFTSEMRFIPESPMERAHCYRVLDDNGQPNMSNFVQVSKEVAVKMYATMLTLQVMDTIFYEAQRQGRISFYVTSIGEEAINVASAAALSIDDVIFPQYREPGVLLWRGFTLQEFANQCFGNKADYGKGRQMPIHYGSNKHNYVTVSSTVATQIPQAVGAAYSLKMDGKDACTVTYFGDGGSSTGDFHAALNFAAVMEAPVIFICRNNGWAISTPVSDQFRSDGVVVRGRGYGVRSIRVDGNDALAMYTAVHAARKMAITEHRPILIEALTYRAGHHSTSDDSSKYRPVSEIELWRMARDPVSRLRRWIESNDWWSGEAESELRSNVRKEVLDAIQVAERVEKPPIAEIFTDVYDAPPSNLCEQEKLLRETIRRYPQDYPPDVPAL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1532 481 CDD TPP_E1_PDC_ADC_BCADC 141 433 - -
Vvi4g1532 481 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 66 478 - -
Vvi4g1532 481 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 122 475 IPR029061 -
Vvi4g1532 481 Gene3D - 84 478 - -
Vvi4g1532 481 FunFam 2-oxoisovalerate dehydrogenase subunit alpha 84 480 - -
Vvi4g1532 481 Pfam Dehydrogenase E1 component 143 440 IPR001017 GO:0016624
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1532 Vvi-Chr4 23045682 23049226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1532 83 318 Acyl Lipid Metabolism Gene Families AT5G09300 79.747 4.70e-140 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1532 K00166 - vvi:100258429 974.541