Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1526 ATGGGTGGTTTTACCAGGCCTTCATGGGCATTTCTGCTACTTGTATTTATAGTTCTAGTCGTTTCCTGTTTCCAAATCGGCACCAAAACGGTTTTCCCGAGATGGGTCGTGTTGGGCGGCGGAGAAACCGGAATATCGGAAGAAGCACCCAGCTGTTTCGGGCTTTTCCGGGAGGTGCCGCCGAGGAAGGTGGTGATGTCGATAAGAGATTTCGGTGGGGTGGGCGACGGCGTGACGTCCAATACCGAAACGTTTCGGAGGGCTATACGGTACATGCAAAGTTTCGGAAACATAGGTGGGTCCCAGCTTAACGTTCCAAGAGGAAGATGGGTTACGGGAAGCTTCAATCTCACCAGCAATTTCACCCTTTTTCTGGAAGAGGGTGCTGTGATTCTGGGTTCCCAGGATTTGGAGGACTGGCCAATCATAGAGCCTTTGCCTTCATATGGAAGAGGAAGAGAGAGATTAGGTGGAAGACATATTAGTCTTATCCATGGAGATGCTCTCGCCAATGTTGTCATTACTGGACAGAATGGAACAATTGATGGTCAAGGAAAGATGTGGTGGGAGCTGTGGTGGAACAGGACATTGGAGCACACCCGAGGCCACCTGCTTGAAATTAAGAACTCTCACAACATTCTCATCTCAAACCTCACCTTCATGAACTCTCCTTTCTGGACTATCCATCCTGTTTACTGCAGCAATGTTGTTATCAAAGACGTGACAATCTTGGCTCCTCTTAATGCCCCAAACACTGATGGTATTGATCCAGACTCAAGTACCAATGTCTGCATTGAAGACTGTTATATTGAGAGCGGGGATGATCTTGTAGCAGTGAAAAGTGGGTGGGATCAGTACGGCATTGCCATGGCTCGTCCAAGCTCAAACATCATAGTGAGGAGGCTTTCAGGGACTACTCCAACGTGTTCTGGGGTTGGAATAGGCAGTGAGATGTCAGGTGGAATTTCAAATGTCACTATGGAGGATTTGCATATTTGGGATTCTGCAGCTGGGGTACGAATAAAGACTGATAAGGGGAGAGGAGGATATGTGGTAAATATTACCATAAATAACATAAGAATGGAGAGAGTTAAGGTACCTATAAGGTTCAGTAGAGGCTCCAATGACCACCCTGATGACGGATGGGACCCAAAAGCTGTCCCAAAAATAAAGGGTATTTTTATAAGTAATGTGGTCAGTTTGAATTCAACGAAAGCCCCACTCTTGGAGGGTATTGAGGGTGCACCTTATGAAGGGATATGCATGAAAAATGTTACTCTACTTGGTCTTGCTCCAGCAGCAAAATGGCACTGCGAATTTGTCTCAGGTTTTACAGATGCGGTCTTTCCAGTGTCATGTCCCCAGATGCAGAGCAATGTTTCTTCATCATGGTGTTTAGACCACCTTGGAAATTTACAAATTGATAGCAGCAGGAAATCTAGCAGGAAATCTGTGACATTAGGGATGGCAATGGGACAGTCCCAACAGAATCCTGAACTCATCAGGGAGCTAACCCCTACTCACCCCAATCTGCCTACTAAGGGAATGGTTTGA 1554 0.4646 MGGFTRPSWAFLLLVFIVLVVSCFQIGTKTVFPRWVVLGGGETGISEEAPSCFGLFREVPPRKVVMSIRDFGGVGDGVTSNTETFRRAIRYMQSFGNIGGSQLNVPRGRWVTGSFNLTSNFTLFLEEGAVILGSQDLEDWPIIEPLPSYGRGRERLGGRHISLIHGDALANVVITGQNGTIDGQGKMWWELWWNRTLEHTRGHLLEIKNSHNILISNLTFMNSPFWTIHPVYCSNVVIKDVTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIAMARPSSNIIVRRLSGTTPTCSGVGIGSEMSGGISNVTMEDLHIWDSAAGVRIKTDKGRGGYVVNITINNIRMERVKVPIRFSRGSNDHPDDGWDPKAVPKIKGIFISNVVSLNSTKAPLLEGIEGAPYEGICMKNVTLLGLAPAAKWHCEFVSGFTDAVFPVSCPQMQSNVSSSWCLDHLGNLQIDSSRKSSRKSVTLGMAMGQSQQNPELIRELTPTHPNLPTKGMV* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1526 517 Pfam Glycosyl hydrolases family 28 162 442 IPR000743 GO:0004650|GO:0005975
Vvi4g1526 517 SUPERFAMILY Pectin lyase-like 60 456 IPR011050 -
Vvi4g1526 517 Gene3D - 56 443 IPR012334 -
Vvi4g1526 517 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vvi4g1526 517 SMART pbh1 260 292 IPR006626 -
Vvi4g1526 517 SMART pbh1 351 397 IPR006626 -
Vvi4g1526 517 SMART pbh1 294 316 IPR006626 -
Vvi4g1526 517 SMART pbh1 322 343 IPR006626 -
Vvi4g1526 517 SMART pbh1 233 259 IPR006626 -
Vvi4g1526 517 PANTHER PECTIN LYASE-RELATED 12 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1526 Vvi-Chr4 22947573 22951147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1526 1 456 Glycoside Hydrolase AT4G33440 72.210 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1526 - - vvi:100252291 982.63