Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1506 ATGATCAAGCTTCATTTCTTTGTCCTCCTTGTTGGATTAATATTTGCGCTCATCTTCCTACGATTTTCGGATGGGAAGGTCATGATGGAGTATATCGGAGCTACAGGGGTTCCAGTGACATTTGATGATGTTCCAATAGAAAAAGACATCGACTTCCATTTTATACTTGGCTTTGCCATTGATGCAGACGAATCAGGTAACGCTCAAAATGGCATATTCTCACCATACTGGGCTTCCACCTTAACGCCTGACTCCGTAGCAGACATCAAGGCACAACACCCAAATGTAAGAGCCTTAGCTAGCCTGTCCGGATGGAGCCTCGGGGAAAAAATCCTCCGCTGGTATGATCCAAAGGACCCCGAGCTTTGGATCTCCAATGCTTTCACCTCTCTTCAATCCCTTATTGTCACTTACAATCTTGATGGCATTGACATAGACTACGAAAACTTCCCCAAACGCAATTCAACTTTCCCATACTGCATTGGCGAGCTCATCTCCCTCTTGAAGAATCAAAGTGTCATTTCGGTAGCCACCATTGCACCCTTTAATAGTAGAGCCGTGCCTTACATACAGCTCTGTGATGGATATGGAGATCTTATAGACTATGTCAACTACCAATTCTACACCGACAAAGTTAGTACACCGAAACGGTACCTTGAAGCTTTTAAGCTCCGAGCCAAGCAGTTCGATCAAGAGAAGTTGCTGCCTAGCTATGAAGTTGACGGGAGGGGGATTCAAGGGGAGGCATTTTTTGATGCATTGAAGCTTTTAGAGAAAAATGGAATTGATGTGAAGGGAGTAATGATCTTCTCGGCTGATGCTTCTTCTGCCAATGGCTATTACTATGAGAGGAAATCGCAAGCTTTCTTGCTTAACTCCACTCGCATTTGA 891 0.4433 MIKLHFFVLLVGLIFALIFLRFSDGKVMMEYIGATGVPVTFDDVPIEKDIDFHFILGFAIDADESGNAQNGIFSPYWASTLTPDSVADIKAQHPNVRALASLSGWSLGEKILRWYDPKDPELWISNAFTSLQSLIVTYNLDGIDIDYENFPKRNSTFPYCIGELISLLKNQSVISVATIAPFNSRAVPYIQLCDGYGDLIDYVNYQFYTDKVSTPKRYLEAFKLRAKQFDQEKLLPSYEVDGRGIQGEAFFDALKLLEKNGIDVKGVMIFSADASSANGYYYERKSQAFLLNSTRI* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1506 296 PRINTS 2-S globulin family signature 44 63 IPR000677 -
Vvi4g1506 296 PRINTS 2-S globulin family signature 86 104 IPR000677 -
Vvi4g1506 296 Pfam Glycosyl hydrolases family 18 55 209 IPR001223 GO:0005975
Vvi4g1506 296 Gene3D Glycosidases 25 293 - -
Vvi4g1506 296 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 140 148 IPR001579 GO:0004553|GO:0005975
Vvi4g1506 296 CDD GH18_narbonin 27 275 - -
Vvi4g1506 296 PANTHER CHITINASE 2-LIKE 21 293 - -
Vvi4g1506 296 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 296 IPR001223 GO:0005975
Vvi4g1506 296 SUPERFAMILY (Trans)glycosidases 22 289 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1506 Vvi-Chr4 22635781 22636790 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1506 - - vvi:100252399 597.045