Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1504 ATGGAGGATGCAATGTTAAAGTTCTCTCTACCAGAAAATATCCTTCAGCCATTATTCTCTGTTTCAAACTCATCCACCCTGGATGAGACACTAGAACTTCTTATAGAAGCTTCAAAGACCCCTGGTGGTCGCCTGGACCTGGGTTCCAAGAATATCCTTCCAGTTGTCCTTCAGCTTAGTCAATCCCTCTCTTATCCTTCAGGTCATGATATTCTATTGCTGTCTTTAAAGCTTCTCAGAAACCTATGTGCGGGAGAAATGACAAATCAAAATTTGTTTATTGAACAGAATGGAGTCAAAGCAGTTTCAACTATTTTGTTGAGCTTTGTAGGGCTTGATTCTGATTCAGATTATGGGATTATCCGCATGGGGTTACAGCTTTTGGGAAATGTTTCATTGGCTGGAGAAAGACATCAGCGTGCTGTTTGGCATCACTTCTTTCCAGCTGGGTTTCTTGAGATTGCAAGAGTCCGGACACTGGAAACTAGTGATCCATTGTGTATGGTTATATATACTTGTTTTGATCAGAGTCATGAATTCATTACAGAGATCTGCGGAGATCAAGGATTGCCTATTCTGGCAGAAATTGTACGAACTGCTTCAACAGTTGGTTTTGAAGAAGATTGGCTGAAGTTGCTTCTTTCCAGAATTTGTTTAGAAGAATCCCATTTTCCTATGTTGTTCTCTAAATTATGCCCAGTTGGTACTTCTGGCAATTATGAAAGTATAGAATTTAAAGTCGATGTTTTTGCATCAGAACAAGCATTTCTTATGGATATTGTGGCAGAGATCTTAAATGAGCAAATCAATAAGATGACTGTATCCAGTGATGTTGCATTGTGTGTTCTTGGAATATTGAAGAAATCTGCTGGGGTTCTTGATTCTGTCTCTACATGCAAATCTGGATTTTCTGCAGGATCCAATGCTATTAATGTTCTTAAATATTCACTTACCATTTTGAAAGAGATCTGTGCTCGGGATGCTCAGAAAAGCTCTAATGAGCATGGATCAGTGGATGTTGTTGACTTGCTTGTATCATCGGGGCTTTTAGAACTGCTTTTATGTTTGCTTCGTGACCTTGAACCCCCTGCAATAATTAGGAAAGCCATCAAACAAGGTGAGAACCAAGATGGAGCAGCTTCTTATTCACCCAAGCACTATCCTTACAGAGGGTTTCGGAGGGATCTTGTTGCTGTCATTGGCAATTGCGCATACAGAAGGAAGCATGTACAAAATGAAATCAGAGAGAGGAATGGAATACTTTTACTATTACAACAGTGTGTAACTGATGAAGAGAATCAATTTTTGAGGGAATGGGGCATATGGTGTGTAAGGAATTTATTAGAAGGCAATGTAGAGAACCAACGGGTGGTAGCTGAATTGGAGCTTCAGGGATCTGTTGATGTGCCTGAAATTGCTGGACTTGGTCTCCGAGTTGAAGTGGATCAGAAAACTGGACGTGCAAAGCTTGTAAATGTTTCATAA 1485 0.4007 MEDAMLKFSLPENILQPLFSVSNSSTLDETLELLIEASKTPGGRLDLGSKNILPVVLQLSQSLSYPSGHDILLLSLKLLRNLCAGEMTNQNLFIEQNGVKAVSTILLSFVGLDSDSDYGIIRMGLQLLGNVSLAGERHQRAVWHHFFPAGFLEIARVRTLETSDPLCMVIYTCFDQSHEFITEICGDQGLPILAEIVRTASTVGFEEDWLKLLLSRICLEESHFPMLFSKLCPVGTSGNYESIEFKVDVFASEQAFLMDIVAEILNEQINKMTVSSDVALCVLGILKKSAGVLDSVSTCKSGFSAGSNAINVLKYSLTILKEICARDAQKSSNEHGSVDVVDLLVSSGLLELLLCLLRDLEPPAIIRKAIKQGENQDGAASYSPKHYPYRGFRRDLVAVIGNCAYRRKHVQNEIRERNGILLLLQQCVTDEENQFLREWGIWCVRNLLEGNVENQRVVAELELQGSVDVPEIAGLGLRVEVDQKTGRAKLVNVS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1504 494 Gene3D - 5 218 IPR011989 -
Vvi4g1504 494 Gene3D - 253 467 IPR011989 -
Vvi4g1504 494 SUPERFAMILY ARM repeat 15 456 IPR016024 -
Vvi4g1504 494 PANTHER ATAXIN-10 16 494 - -
Vvi4g1504 494 Pfam Spinocerebellar ataxia type 10 protein domain 392 490 IPR019156 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1504 K19323 - vvi:100264428 917.146