Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1503 ATGATACACAACCTCTCGAAGCCCCTTGATCTCATACACTTCCCAAAGCCCTCCAAAACTCTAATCACTAAAACTCACTTTTCTTCTTCTGGCCCTTATGGACATGTTTCTCCACCAATTTTACGGTTCAAGAGCAACTCATTTCTTCTCTATGAGCGCACCAGCCTCAGCATTAGGGCTTCTACAATTTCCTCTTCGGCTTTGACTTCGCCGCCTGAAGAAGATGCAGAGTCCACACAGCTATTTGAGAAATTGAAGGATGCAGAGAGGGAACGAATAAATAAATTGGAAGAACTTGAAAACAAGGCTAATGTGCAATTAGAGAGGCAGCTTGTCCTGGCTTCAGATTGGAGTAGGGCATTGTTGGCTATGCAGGGAAAATTGAAGGGGACTGAATGGGATCCTGAGAACTCACACAGGATTGACTACAGTGAATTTTGGAGACTTCTTAACTCAAATAATGTCCAGTTCATGGAGTACTCAAATTATGGCCAGACAATATCAGTTATTCTGCCATACTACAAAGATGGAAAAAAGGAAGGGGGAGAAGGAAATTTAAATAAGGAAATTGTTTTTCGGCGCCATGCAGTTGACCGGATGCCAATTGATTGTTGGAATGATGTTTGGCGAAAGTTGCATGAACAGGTGGTAAATGTTGACGTTCTTAATGTGGATGCTGTACCTGCAGAAGTCTACTCCACTATTGCAACTGCAGTTGTATGGTCAATGCGGCTTGCACTTTCTATTGTATTGTATCTTTGGATTGATAATTTGACGAGACCAATTTATGCAAAGTTAATACCTTGTGATTTGGGAACTCCTAGCAAAAAGCCAAGACAGCCACTCAAGCGACGTACACTTGGATCGTTAGGCAAGAGTCGGGCAAAGTTTATATCAGCAGAAGAAACTACTGGTGTTACCTTTGATGATTTTGCGGGCCAGGAATACATAAAAAGGGAACTGCAAGAGATTGTGCGTATTCTAAAGAATGATGAAGAGTTCCAAAATAAGGGCATCTATTGCCCAAAAGGTGTGCTTCTCCATGGGCCTCCTGGAACTGGTAAAACATTGCTGGCTAAAGCTATTGCTGGTGAGGCAGGTCTTCCATTTTTTGCAGCAAACGGCACTGATTTTGTAGAGATGTTTGTAGGTGTGGCAGCGTCACGTGTCAAAGATCTGTTTGCTAGTGCTCGGTCATTTTCACCATCCATCATTTTTATTGATGAGATAGATGCTATTGGCAGCAAGCGTGGTGGGCCTGATATTGGTGGGGGTGGTGCTGAGAGGGAACAGGGCTTGCTTCAGATACTGACTGAGATGGATGGATTTAAAGTTTCAACAGCTCAGGTGTTAGTTATAGGTGCAACCAACAGACTGGACATTCTAGATCCTGCTCTCCTGAGGAAGGGCCGTTTTGACAAGATTATAAGGGTTGGTTTACCATCTAAAGATGGTAGACTGGCCATATTAAAGGTGCATGCAAGGAATAAATTTTTCCGTTCAGAGGAGGAAAAGGAGGCTCTATTGCAGGAAATTGCAGAGCTTACAGAAGACTTCACTGGGGCAGAGCTGCAGAATATACTGAATGAAGCTGGAATTTTAACTGCCCGGAAGGATTTAGATTACATTGGCCGGGAAGAACTTCTGGAGGCCTTAAAAAGGCAAAAGGGAACATTTGAAACAGGTCAAGAGGACAGTACTGAAATTCCAGAGGAATTGAAACTGAGATTGGCATATAGAGAGGCAGCTGTGGCTGTTCTTGCATGCTACTTTCCAGATCCCTACCGCCCTTTCATTGAGACAAATATAAATTCCATACATAGCCAGCCAAATATGCGCTATGCAGAAACTTCTGGAAGGGTCTTCTCAAGGAAAGCAGATTATTTGAACTCTATAGTGCGTGCCTGTGCTCCCAGAGTAATTGAGGAGGAGATGTTTGGGGTTGACAACTTGTGTTGGATCTCTGCAAAGGCTACATCAGAAACGTCAAGGCTCGCAGAATTTTTGATTCTGCAGACGGGAATGACAGCATTTGGAAAAGCTTATTACAGAAATCAAGGTGATCTTGTGCCAAATCTTGCAGCTAAGCTTGAAGCACTTAGAGATGAATACGTGCGCTTTGCTGTGGAGAAATGTTCATCTGTGCTTAGGGAATATCAGTCAGCTGTGGAGACAATCACAGATATTCTACTTGAGAAGGGAGAGATGAAAGCTGATGAAATTTGGGAGATATATACAAGGGCTCCTAGAATACCTCAGCCTGCTGTGAATCCGGTTGATGAATATGGTGCCTTAATTTATGCTGGAAGATGGGGAGTCCATGGGATTACACTTCCTGGAAGGGTTACGTTTGCACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAGACTCAAATCATCAGTGATGAAACTTGGAAACTAATCGATGGTATCTGGGATAAAAGGGTTCAGGAAATTAAAGCTGAAGCCTCAATCCAAGTTGAAGAAGAGAAGGAGAAGCCACAACTTTTAGTGGCCAGCCATTTCCTTTGA 2547 0.4338 MIHNLSKPLDLIHFPKPSKTLITKTHFSSSGPYGHVSPPILRFKSNSFLLYERTSLSIRASTISSSALTSPPEEDAESTQLFEKLKDAERERINKLEELENKANVQLERQLVLASDWSRALLAMQGKLKGTEWDPENSHRIDYSEFWRLLNSNNVQFMEYSNYGQTISVILPYYKDGKKEGGEGNLNKEIVFRRHAVDRMPIDCWNDVWRKLHEQVVNVDVLNVDAVPAEVYSTIATAVVWSMRLALSIVLYLWIDNLTRPIYAKLIPCDLGTPSKKPRQPLKRRTLGSLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEEEKEALLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGREELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAVLACYFPDPYRPFIETNINSIHSQPNMRYAETSGRVFSRKADYLNSIVRACAPRVIEEEMFGVDNLCWISAKATSETSRLAEFLILQTGMTAFGKAYYRNQGDLVPNLAAKLEALRDEYVRFAVEKCSSVLREYQSAVETITDILLEKGEMKADEIWEIYTRAPRIPQPAVNPVDEYGALIYAGRWGVHGITLPGRVTFAPGNVGFSTFGAPRPMETQIISDETWKLIDGIWDKRVQEIKAEASIQVEEEKEKPQLLVASHFL* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1503 848 SMART AAA_5 341 482 IPR003593 GO:0016887
Vvi4g1503 848 Coils Coil 498 525 - -
Vvi4g1503 848 FunFam Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic 481 564 - -
Vvi4g1503 848 Pfam AAA+ lid domain 509 549 IPR041569 -
Vvi4g1503 848 Pfam ATPase family associated with various cellular activities (AAA) 345 479 IPR003959 GO:0005524|GO:0016887
Vvi4g1503 848 Coils Coil 82 106 - -
Vvi4g1503 848 ProSitePatterns AAA-protein family signature. 450 468 IPR003960 GO:0005524|GO:0016887
Vvi4g1503 848 FunFam ATP-dependent zinc metalloprotease FTSH 7, chloroplastic 290 479 - -
Vvi4g1503 848 FunFam Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic 563 749 - -
Vvi4g1503 848 Gene3D - 289 479 IPR027417 -
Vvi4g1503 848 Gene3D - 481 561 - -
Vvi4g1503 848 PANTHER METALLOPROTEASE M41 FTSH 87 747 - -
Vvi4g1503 848 Gene3D Peptidase M41 563 749 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi4g1503 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 554 IPR027417 -
Vvi4g1503 848 SUPERFAMILY FtsH protease domain-like 570 752 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1503 Vvi-Chr4 22564618 22596179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1503 205 556 Miscellaneous Gene Families AT3G02450 41.690 2.50e-69 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1503 - - vvi:100259256 1647.1