Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1494 ATGAGGGGTGGAACAGTTCAGATCAATTGGCACGACACAAAGCCAATCCTAACCCTAGATTTTCATCCCCTTTCTGGAACTCTCGCTACCGGCGGTGCTGATTACGACATCAAGCTATGGCTGATAAATTCAGGGGAAGTGCAAAAGGAAGTTCCAACTGTTTCCTACCAAACTAGCCTTTCTTACCATGGTTCTGCAGTAAATATTCTTCGCTTCTCTCCAACTGGAGAACAACTTGCCTCTGGTGCTGATGGAGGTGAGCTGATCATCTGGAAGTTACACTCTACAGATACTGGTCCAAGTTGGAAAGTCCTCAAGACATTGTCATTTCACCGCAAGGATGTCCTGGACCTGCAGTGGTCTACCGATGGTGCATTTCTCATTTCTGGATCTGTTGATAATTCTTGCATAATATGGGATGTTAATAAAGGTTCTGTTCATCAGATTTTGGATGCCCATTTGCATTATGTTCAGGGTGTGGCATGGGATCCACAGTCCAAGTATGTTGCATCTCTTAGTTCAGATAGATCCTGCAGGATTTATGTCAATAAGCCTCAAAATAAAACCAAAGGGATAGAAAAAATGAACTATGTTTGTCAGCATGTCATCACAAAATCAGAACAGCAAATGACAGATGATTCCAAGGTGCAGTCTGTAAAAAGTCATCTATTTCATGATGAGACATTGCCGTCTTTCTTCCGAAGATTAAAGTGGTCACCTGATGGATCATTTTTGCTTGTACCTGCAGGTTCGTACAAATTCTCACCTGCATCAGGACCAGTAAACACTGCTTATGTGTTTTCTAGAAAAGATCTTTCAAGACCTGCTTTACAGCTCCCTGGTTCTAGCAAACCTGTCATAGCTGTCCGCTTCTGTCCTATGGCTTTTCACCTTCAGGGATCAAACTCAGCTGGGTTCTTCAAGCTTCCTTATCGCCTAATATTTGCGGTGGCCAGTCTTAACTCTTTATATATCTACGACACAGAAAGCATTCCACCAATAGCAATCTTGGCTGGTCTTCACTATGCAGCCATTACGGACATTGCATGGTCGCATGATGGCAAATATTTAGCTATATCCTCCCAAGACGGTTACAGTACCCTTGTAGAATTTGAAAATGGTGAACTTGGGTCCCCCTTCCTTTTATCAGAAGTCGAGAGTGTCTCGGGTGATGAGAAGAAGAGCCCTGTCCAGCAGCCCAAGGCCATGGAGGTTGAAGAAACTACACAAGTTGTTACTGTTTCAGTAGATAGCAGAAAAAGAGAAGTAGGAAGGAATGATCTCAAAGAGGCATCGCCAAATGCAACAAGTAGTTCCACTTCTACCCCCAAGCCTGCAAAGAGGAGAATCACCCCGGTGTCAATCGAGCCATCATAA 1377 0.4372 MRGGTVQINWHDTKPILTLDFHPLSGTLATGGADYDIKLWLINSGEVQKEVPTVSYQTSLSYHGSAVNILRFSPTGEQLASGADGGELIIWKLHSTDTGPSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDVNKGSVHQILDAHLHYVQGVAWDPQSKYVASLSSDRSCRIYVNKPQNKTKGIEKMNYVCQHVITKSEQQMTDDSKVQSVKSHLFHDETLPSFFRRLKWSPDGSFLLVPAGSYKFSPASGPVNTAYVFSRKDLSRPALQLPGSSKPVIAVRFCPMAFHLQGSNSAGFFKLPYRLIFAVASLNSLYIYDTESIPPIAILAGLHYAAITDIAWSHDGKYLAISSQDGYSTLVEFENGELGSPFLLSEVESVSGDEKKSPVQQPKAMEVEETTQVVTVSVDSRKREVGRNDLKEASPNATSSSTSTPKPAKRRITPVSIEPS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1494 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 145 - -
Vvi4g1494 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Vvi4g1494 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Vvi4g1494 458 Gene3D - 5 251 IPR015943 GO:0005515
Vvi4g1494 458 Gene3D - 252 420 IPR015943 GO:0005515
Vvi4g1494 458 Pfam WD domain, G-beta repeat 11 40 IPR001680 GO:0005515
Vvi4g1494 458 Pfam WD domain, G-beta repeat 57 92 IPR001680 GO:0005515
Vvi4g1494 458 Pfam WD domain, G-beta repeat 148 181 IPR001680 GO:0005515
Vvi4g1494 458 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Vvi4g1494 458 Pfam WD domain, G-beta repeat 341 364 IPR001680 GO:0005515
Vvi4g1494 458 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Vvi4g1494 458 SMART WD40_4 53 92 IPR001680 GO:0005515
Vvi4g1494 458 SMART WD40_4 272 327 IPR001680 GO:0005515
Vvi4g1494 458 SMART WD40_4 101 140 IPR001680 GO:0005515
Vvi4g1494 458 SMART WD40_4 3 41 IPR001680 GO:0005515
Vvi4g1494 458 SMART WD40_4 330 370 IPR001680 GO:0005515
Vvi4g1494 458 SMART WD40_4 143 182 IPR001680 GO:0005515
Vvi4g1494 458 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 446 IPR045145 GO:0006335
Vvi4g1494 458 MobiDBLite consensus disorder prediction 391 458 - -
Vvi4g1494 458 MobiDBLite consensus disorder prediction 430 447 - -
Vvi4g1494 458 FunFam Chromatin assembly factor 1 subunit FAS2 4 253 - -
Vvi4g1494 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Vvi4g1494 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Vvi4g1494 458 SUPERFAMILY WD40 repeat-like 10 366 IPR036322 GO:0005515
Vvi4g1494 458 MobiDBLite consensus disorder prediction 402 416 - -
Vvi4g1494 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1494 25 181 Miscellaneous Gene Families AT5G08390 26.752 2.94e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1494 K10751 - vvi:100245389 892.493