Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1493 ATGGGGCTTATCACGGCCAGTTCCTTGTCGTGTATCCTTAGAAAGTGTGTTCCCCACTCAGCAATCTCACAAGCTAAGCAAACCCATGCCCAAATCCTTGTTCATGGCTTCATCCCCAACATCACACTTCAAACTGATCTCTTGTTGGTCTACTCCAAATGCGGTGTTCTTCAAGATGCTCGCAAGGTTTTTGACAAAATGGTTGAAAGAAATATGCACTCATGGAACATTTTGATCGCTTCATATGCTCATAATTGTTTCTTTTACGATGCTTTGGGTGTTTTTGATAGTTTTTTGAAAATGGGGTTTCGACCGGATCATTTCACATTGCCTCCAGTGTTTAAGGCTTGTGCAGGAATTGGAGATTCTTATCTGGGGAAGATGCTTCACAGTTGGGTGATTAGGATTGGGTTTGAAGAATATGTGGTTGTTGGAAGCTCGGTTTTGGATTTTTATGCGAAATGTGGGGGTTTAGTTGATGCATGGCGGTGCTTTGTTAATATGTCTTGGAGGGATTCGGTTGTTTGGAATTTGATGATTGTGGGGTTGGGAAAGGCTTGTTTTTTCAGGGATGCTTTGGAATGTTTTAGGGACATGCTTAGTGAGGGAGTGAAGATGGATTCAAGGACAGTCCCAAGCATTTTAAGCGTGTGTGGAGGGGAAGGAGACTTGATGAAAGGCAAAGAAATTCATGGGCAAGTGGTTAAGAATCAAATTTTTGGTTGTGAGGTTGCTATTGGAAATTCGTTGATTGATATGTATGCAAAGTGTGGGTGCTTGCATGATTCAGAAAAGGTTTTCACGACAATGAGTGAACTGAATCTGGTGACATGGACCTCTATGATATCTTGCTATGGGGTCCATGGTAAAGGACATGAAGCTTTGGCTCTTTTTAAGAAAATGAAATATTGTGGATTTCAGCCTAACTGTGTTACAATCACTGCAATTTTGGCTAGTTGTAGCCACTCTGGTCTTATAGAACAAGGCCGGAAAATTTTTTACTCAATTAATTTAGACTATGGGTTTGAGCCCAGTGCAGAGCACTATGCTTGTATGGTGGATCTATTAGGTCGTTTTGGATATCTTGAGGAAGCTTTTGAATTGATAAAAAATATGAAGTCAGCAGCAACAGCAAGTGTTTGGGGTGCCCTGCTGGCTGGTTGTTTGATGCACAAGAATATTGAGATTGGAGAAATTGCTGCTCATTGCCTCTTTGAATTGGAACCCAGAAACTCTAGCAACTATATAGCCTTGTGTAGTATGTATGATTCTCTTGGAATATGGGACGGTGTTTCAAGAACCAGGGCAAAAATGAGAGAATTAGGATTGGTTAAGACTCCTGGTTGTAGCTGGATTACTGTTGCTGGAAGAGTCCATAAATTCTATCAAGAGGACCTTTCTCATCCTGAGACTCAGATGATATATGAAACATTGCATGGAATTGTTAACATACTTATGTTGCCCAAAGGTTGGGAATAG 1479 0.4097 MGLITASSLSCILRKCVPHSAISQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMVDLLGRFGYLEEAFELIKNMKSAATASVWGALLAGCLMHKNIEIGEIAAHCLFELEPRNSSNYIALCSMYDSLGIWDGVSRTRAKMRELGLVKTPGCSWITVAGRVHKFYQEDLSHPETQMIYETLHGIVNILMLPKGWE* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1493 492 FunFam Pentatricopeptide, putative, expressed 1 125 - -
Vvi4g1493 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Vvi4g1493 492 Pfam E motif 391 452 IPR046848 -
Vvi4g1493 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi4g1493 492 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 171 482 IPR046960 GO:0003723|GO:0009451
Vvi4g1493 492 Pfam PPR repeat 349 374 IPR002885 -
Vvi4g1493 492 Pfam PPR repeat 174 204 IPR002885 -
Vvi4g1493 492 Pfam PPR repeat 48 71 IPR002885 -
Vvi4g1493 492 Pfam PPR repeat 74 103 IPR002885 -
Vvi4g1493 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Vvi4g1493 492 Gene3D Tetratricopeptide repeat domain 246 482 IPR011990 GO:0005515
Vvi4g1493 492 Pfam PPR repeat family 274 320 IPR002885 -
Vvi4g1493 492 FunFam Small kernel1 248 471 - -
Vvi4g1493 492 Gene3D Tetratricopeptide repeat domain 3 124 IPR011990 GO:0005515
Vvi4g1493 492 Gene3D Tetratricopeptide repeat domain 125 231 IPR011990 GO:0005515
Vvi4g1493 492 NCBIfam pentatricopeptide repeat 174 207 IPR002885 -
Vvi4g1493 492 NCBIfam pentatricopeptide repeat 73 106 IPR002885 -
Vvi4g1493 492 NCBIfam pentatricopeptide repeat 276 310 IPR002885 -
Vvi4g1493 492 FunFam Os11g0213500 protein 126 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1493 Vvi-Chr4 22409270 22410748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1493 8 482 Glycoside Hydrolase AT3G49170 35.625 4.49e-102 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1493 - - vvi:100267705 1019.99