Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1486 ATGAGAGGAGCAATGGGTTCAACGCAGAGCCCAATTGAGGCTAGACAACGGCTATCTGTATCTATTGAAGATACATACAAAAGAAGGTCACAGAGGAGTAAAGTTAAAGATGAGAAGCCCTTTCACATCCCCATACAAGACAGGAGCACAAAATGCAAGTTTCCTGCATTGAAGCTGGTACTAGTTATAATTGTATGTGGCACTTTTATTACACTCTTCTACTCTCCAGCTGTTTGTAATGACCATATATCACACGCTAACTCCCGGCCAAGTTTTGTTAACAGGTGGATATGGGGTGGTTCAGATCCACGGTATATATCGGATTTAGATGTTAATTGGGATGATATCTCAAAAGTCATTGATCAGCTTGTTGACATGAATCAATATCAGGGAATTGGTCTTCTAAACTTCAATAAGACTGAAGTCAATAATTGGAAGCAGCTTATTCCCCAAACAAGTCACATTGTTCTGCACCTGGACTACGCTGAAAAAAATGTGACCTGGGATACCTTATATCCGGAGTGGATTGATGAGGAAGAAGAAGATGAAGTCCCCATTTGCCCATTGCTGCCAAAGCTTGAAGCCCCGAAAAAACGGCTTGATCTTATTGCTGTGAAGCTCCCCTGCCGGAATGAAGGAAACTGGTCCAGAGACATTGCTCGGTTGCACTTGCAGCTGGCGGCAGCACAGCTTGCAGCCTCTGTCAAAGGCAATTACCCTGTGCATTTGCTGTTTATTACCAGCTGTTTTCCAATACCAAACTTGTTTACTTGCAAGGAACTTGCTGCCCGTGAAGGGAATACATGGTTGTACAAACCAAATTTGAATGTACTGAGGGAAAAGGTCCAACTCCCAGTTGGGTCATGCGAACTTGCAGTTCCACTCAAGGTCAAAGAGCGGGTTTACTCTGGAGATGTTCGTAGAGAAGCATATGCAACAATCCTGCATTCTGCTCATGTCTATGTGTGTGGAGCTATAGCAGCAGCCCAAAGTATTCGTTTGGCAGGGTCCACCCGAGACCTTGTGATACTTGTCGATGAGACAATCAGTGATTACCACAGAAGTGGACTTGAGGCAGCTGGGTGGAAAATCAGGACAATCCAAAGGATCAGGAACCCAAAAGCTGAAAAGGATGCTTACAATGAATGGAACTACAGCAAGTTCCGCTTATGGCAGCTGACAGACTATGATAAGATCATTTTTATTGATGCAGATTTGCTTGTGCTGAGGAATATTGATTTCTTGTTTGGGATGCCAGAAATCTCTGCAACAGGAAACAATGGCTCTCTATTCAACTCTGGTGTAATGGTGGTTGAGCCATCAAACTGCACATTCCAGCTTTTGATGGATCACATCAATGAGATTGAGTCCTACAATGGTGGAGACCAGGGGTACCTGAATGAAATCTTCACATGGTGGCATAGGATTCCAAGACACATGAATTTCTTGAAGCATTTCTGGATTGGTGATGAGGAAGAGAAGAAACAAATGAAAACTCATCTTTTTGGAGCTGAGCCTCCAATTCTTTATGTCCTTCACTATCTGGGTTTAAAGCCATGGCTGTGCTACAGGGACTATGATTGTAACTGGAATTCGGACATATTTCAAGAGTTTGCAAGTGATGTTGCTCACACTAGGTGGTGGAGAGTGCATGATGCAATGCCAGAACAACTGCAGCAGTTTTGCATGTTGGGCTCTAAGCAAAAGGCAGGATTAGAATGGGACAGGAGGCAGGCTGAGAAAGCAAACTACAGTGATGGACATTGGAGAATCAAAATAAACGATCGTCGTTTACACAAGTGTATTGACAACTTATGCTCCTGGAAGGGCATGTTACGGCACTGGGGCGAGACAAATTGGACAGACGATGAAATTTTCACTCCAACACCACCTGCAATCACCATGGCATCTCTTTCTGGCTAG 1923 0.4389 MRGAMGSTQSPIEARQRLSVSIEDTYKRRSQRSKVKDEKPFHIPIQDRSTKCKFPALKLVLVIIVCGTFITLFYSPAVCNDHISHANSRPSFVNRWIWGGSDPRYISDLDVNWDDISKVIDQLVDMNQYQGIGLLNFNKTEVNNWKQLIPQTSHIVLHLDYAEKNVTWDTLYPEWIDEEEEDEVPICPLLPKLEAPKKRLDLIAVKLPCRNEGNWSRDIARLHLQLAAAQLAASVKGNYPVHLLFITSCFPIPNLFTCKELAAREGNTWLYKPNLNVLREKVQLPVGSCELAVPLKVKERVYSGDVRREAYATILHSAHVYVCGAIAAAQSIRLAGSTRDLVILVDETISDYHRSGLEAAGWKIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLVLRNIDFLFGMPEISATGNNGSLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTHLFGAEPPILYVLHYLGLKPWLCYRDYDCNWNSDIFQEFASDVAHTRWWRVHDAMPEQLQQFCMLGSKQKAGLEWDRRQAEKANYSDGHWRIKINDRRLHKCIDNLCSWKGMLRHWGETNWTDDEIFTPTPPAITMASLSG* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1486 640 Pfam Glycosyl transferase family 8 315 521 IPR002495 GO:0016757
Vvi4g1486 640 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 306 557 IPR029044 -
Vvi4g1486 640 FunFam Hexosyltransferase 306 558 - -
Vvi4g1486 640 CDD GT8_Glycogenin 309 554 - -
Vvi4g1486 640 PANTHER GLYCOGENIN SUBFAMILY MEMBER 217 601 - -
Vvi4g1486 640 SUPERFAMILY Nucleotide-diphospho-sugar transferases 309 559 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1486 Vvi-Chr4 22283979 22287943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1486 13 640 Glycosyltransferase AT3G18660 66.102 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1486 K20890 - vvi:100248912 1311.98