Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1479 ATGGGGGTTGTTCCTGAAGAACTTACTGAAGATAATTATGAGAACTGGAAAGCATGCCTGCAAAGCTATTTAATCGGGCAAGGTCTTTGGGATGTTGTCTCTGGCGTGGACCCTAAACCTGAAAAACTTACTGGCTTCATTGCTAAACATGAAGAAACTGAGGCGTTTCAGACTTGGAGAAAGAAGAATGCAATCGCTTTACATGCAATACAAATGTCATGCGGAGCAGATGCACTTGTTACTATTAGGGAAACTGATTCAGCTAAATTTGCTTGGGATCACTTGGTTGAATTGCGCCATCATCGAACACAACGCTCACCACAAGTTGAACGTTCAATCCACATCCAAGGGACACGGAACTTCCGCAGGTATGAGTGCTTATTCAAGGCTGTGGATGATGGTGATTGGGTGACTACAAAAGCATTTCTTGATCATGACCCTGATGCTGTGAGAGCAAGTATTTCACCTACAAATGAGACAGCTCTGCATGTTGCTATTTTGGCTGGGCATGCACATATTGTGAAGGAGTTAGTGAAGTTGATGACCCCAAAAGACTTAGAATTGAGAAGTGGACTTGGTGAGACGGCCCTTACAACTGCTGCAATCAGTGGAGTGACAAAGATGGCAAAAGCCATAGTGGAACAATATCCCAGTGCAGTCTGTGTTGGAAATGAACATGGCCAAATCCCTGTTATAGTGGCTTCTTTTTACGACCAAAAAGATATGGTACGTTATCTTTACAGTGTGACTCCAATTGAAGAGCTAAGCCCAGAAAAAGGCACAAATGGTGCCACACTACTTAATTTTCTGGTCTCTGCTAACATATATGATATTGCTTTACATCTGCTGAAACATTATCGACACCTCAGTTTTACCAAAGATTATTATGGCAACTATACTGTGAGAATGTTGGCTCGAAAACCATCAGCGTTCCTAAGTGGAAGTAAGCTTTTGTTTTGGGAACGATGGATCTACTCATGTAAGTACTTCATTGTAAATCATCACCTACTTGAAAAGGTTTATCTCCATTATCTTGCAAACCATTTAACATGTCCGTCCAATTATATGGACACATATGGACCACCCAAAAGTAAACAAGTGCTAGTGTTTCCAGATCTAAAGCATATATATGAAGCAAAATGGACACATGTTGGATCTTCTCAACTCCTTGATTGCATTTTTGAGGAAATACCATATTTGACTAGCTCCCAACTTGAGATGTTTGGCATAAATCAAGCAATCTATGATGCCATCAAGCATGGAATTATTGAGTTTATTGTCGCACTGATCAAACATGATCCTGAATCAATATGGAGGAAAGGTGTAAAGGGTAGAACAATGTTTTCACATGCAGTTGTATTACGCCAAGAAAAGATCTTTAGCCTAGTTTATGGCTTGGGTATAAAGAAGAATGTAATAGCACGACGGCATGATATCTTTCATAACAACATTTTGCATCTAGCTGGCAAGTTATCTCCTCCCTCTCAGCTTGATCGTGTCTCAGGTGCAGCTCTGCAGATGCAAAGGGAGCTTCAGTGGTTCAAGGAAGTGGAGAGCATGGTACAGGCAAAGTATAAAGAAGAATTCAATGAATATCATAAAACACCTATTCATGTCTTTATTGAGGAACACGCCGAATTGGTGAAACAAGGAGAAAGTTGGATGAAGAGCACTGCAGCTTCATGCATGGTTGTGGCCACTCTCATTGCTGCCCTCATGTTTACAACAGCTTTTACACTTCCTGGTGGGACCAAAAACGATACAGGCATCCCTGTGTTTATAAAGAGCAAAGCCTTTATGGTTTTTATAGCATCCGATGCATTATCATTATTCTCTTCCTCCACCTCTGTATTAATGTTTTTAGGAATCCTCACATCACGCTATGCAGCAGAAGATTTCCTCAAATCCTTGCCCATCAAATTGATCATTGGTCTTTCCTCACTTTTCTTCTCTATAGTAAGCATGATGGTAGCCTTTGGCTCGGCCATTTTTGTCGTTCTTTGTCAGGAGTTATCTTGGATTTCATTTCCAATAATTGCTCTTGCTTGCATTCCAATCACATTTTTTGCTTTATTGCAATTTCCTCTCCTTGTTGAGATTGTTACTTGTACGTATGGACGAAGCATATTTGACAAGCCAACAAAACGTCCATACTAA 2157 0.4052 MGVVPEELTEDNYENWKACLQSYLIGQGLWDVVSGVDPKPEKLTGFIAKHEETEAFQTWRKKNAIALHAIQMSCGADALVTIRETDSAKFAWDHLVELRHHRTQRSPQVERSIHIQGTRNFRRYECLFKAVDDGDWVTTKAFLDHDPDAVRASISPTNETALHVAILAGHAHIVKELVKLMTPKDLELRSGLGETALTTAAISGVTKMAKAIVEQYPSAVCVGNEHGQIPVIVASFYDQKDMVRYLYSVTPIEELSPEKGTNGATLLNFLVSANIYDIALHLLKHYRHLSFTKDYYGNYTVRMLARKPSAFLSGSKLLFWERWIYSCKYFIVNHHLLEKVYLHYLANHLTCPSNYMDTYGPPKSKQVLVFPDLKHIYEAKWTHVGSSQLLDCIFEEIPYLTSSQLEMFGINQAIYDAIKHGIIEFIVALIKHDPESIWRKGVKGRTMFSHAVVLRQEKIFSLVYGLGIKKNVIARRHDIFHNNILHLAGKLSPPSQLDRVSGAALQMQRELQWFKEVESMVQAKYKEEFNEYHKTPIHVFIEEHAELVKQGESWMKSTAASCMVVATLIAALMFTTAFTLPGGTKNDTGIPVFIKSKAFMVFIASDALSLFSSSTSVLMFLGILTSRYAAEDFLKSLPIKLIIGLSSLFFSIVSMMVAFGSAIFVVLCQELSWISFPIIALACIPITFFALLQFPLLVEIVTCTYGRSIFDKPTKRPY* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1479 718 Pfam Domain of unknown function 553 666 IPR026961 -
Vvi4g1479 718 FunFam Uncharacterized protein 107 312 - -
Vvi4g1479 718 PANTHER CASKIN 157 706 - -
Vvi4g1479 718 Gene3D - 110 312 IPR036770 -
Vvi4g1479 718 SUPERFAMILY Ankyrin repeat 127 305 IPR036770 -
Vvi4g1479 718 Pfam Ankyrin repeats (3 copies) 138 215 IPR002110 GO:0005515
Vvi4g1479 718 Pfam Domain of unknown function (DUF4219) 8 34 IPR025314 -
Vvi4g1479 718 SMART ANK_2a 226 259 IPR002110 GO:0005515
Vvi4g1479 718 SMART ANK_2a 122 151 IPR002110 GO:0005515
Vvi4g1479 718 SMART ANK_2a 443 472 IPR002110 GO:0005515
Vvi4g1479 718 SMART ANK_2a 157 188 IPR002110 GO:0005515
Vvi4g1479 718 SMART ANK_2a 192 221 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1479 Vvi-Chr4 22176307 22182016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1479 412 673 Miscellaneous Gene Families AT3G12360 24.262 4.53e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1479 - - vvi:100250623 1321.99