Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1475 ATGTTGAGGTCTGATGAGGGAGAAGATGATGTGTTCTTTGATTCTATGGATCACCTGTCATGTGAAGAGTCTGTTCGTGCTAAAGAGGAGTTAGGCTGTGGTAAGTTGGATTATGAAATTTGGAGGAATGAGCCACGGAGTGTTAGGGAAAGAAGGGAAAGTTTTCTACGCGGAATGGGGTTTGTTGAATTTGTTCCTGAGCATGACAAGCCCTTTGGAGACCCTCCAGAGATGGTGGAATTGGGAAGGATTACAGAATGCAGCGGAGCAGTCTCGAGTTCTTCGGTTTCATCGATTAATTGTACAGAGGAAAATTCAGTTTGTAGCGGAAGAGAAGGGGATGTTGGAGCCAATTGTATGGTTGATGCATTGAACCAACAGCAGTCAGAGAAACAGAATATAGATTTTGAGGGGGAGACTCGGGGGCTTTTGCCTTCTGCCCAAGAGTTTGAATGTAATGAAGGGCAGGCTTGTGTAGAAGGATGCAAGAATCTTGGTATGGATAAGAAAACAAGGAGTTGGTGGAAACGCTTCATAAGCAAGAGGAAAGGAAGAGATGCTGCCTCTGCATCTCAGGTTTCAAAGCAAACTTCTGAAACACCCAAGATAAATCAAATGAAGGTGAGGCAAAACAAGAAGAGGTGCATGGAATTCACTGCACTCTGTATTGGACAAGAGATTCAAGCTCACAAGGGCTTCATCTGGACGATGAAGTTTAGTCCAGATGGCCAGTATCTGGCCAGTGGTGGTGAAGATGGCGTGGTTCGCATATGGTGTGTTACATCAACAGATGCCTCTTGCAAATATCTTACCACCGAAGGTAATTTTGGTTGTGAAGTTAAAGACGGCAAGTCCAGTTTTGGGAGGAAAAAGCCAAGTTATGCTCCAGTTGTTATCCCTGATAAGATTTTTCAGATTGAGGAGTCGCCACTGCAAGAGTTCCATGGCCATGCCAGTGATGTCTTGGATCTGGCTTGGTCCAAATCTAATTCTCTCCTTTCCTCTTCCATGGATAAAACTGTTCGGTTATGGCAAGTGGGGCATGACGAATGTCTTAATGTTTTCAGACACAATAACTATGTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGTTGATTGGGCTGATGTTCGAGATGTGATAACGGCTATATGTTACCAGCCAGATGGAAAAGGCTTCATAGTTGGTTCTGTAACTGGCACTTGCTGCTTTTACAATGCATCAGGCAACCATCTTCAGCTGGATGCAAAGGTAAACTTCCATGGTAGAAAGAAAACCTCTGGCAACAAGATTACTGGCATACAGTTTTCACAGGAAGAATCTCAAAAAGTTATGATAACTTCTGAAGATTCCAAGCTTCGGATTCTTGATGGGATTGATGTTGTCTACAAATACAAAGGGCTTCGAAAGTCAGGAAGTCAGATGTCAGCTTCATTTACTTCAACTGGGAGACATATAGTCTCAGTTGGGGAGGACTCTCGTGTGTATGTGTGGAACTATGATGGCTTTTGTTCCCAGTCATCTAAACAAATGAAATCTGTCCAGTCCTGTGAGCATTTCTTCTTTGAAGGTGTCTCTGTTGCAATACCTTGGTCAGACACTGGAGCGGAGAAGAAGGGCTTAGGTAGTGACAGTCTCCGGCAAAGTCCGCCGACACAGGACCACCTAGAGGCTACTTCCTGGATCAGAGATTCCGAACGGTTTTCTCTTGGTAATTGGTTCTCCATGGATGGCTCATGTAGAGGTGGAGCAACATGGCCTGAGGAGAAACTTCCCCTATGGGGTGCACCAGAACATGATCATCACCATCATGACCATCAGCAGCAGCAACAACACAACGATGTCCAGAACCATAATCACCTAGCTCTTTCTGAGGCGTGGGGCTTAGTGATTGCTACAGCAGGTTGGGATGGAACAATCAGGACATTCCACAACTACGGATTGCCAGTCAGGCTTTAG 2025 0.4479 MLRSDEGEDDVFFDSMDHLSCEESVRAKEELGCGKLDYEIWRNEPRSVRERRESFLRGMGFVEFVPEHDKPFGDPPEMVELGRITECSGAVSSSSVSSINCTEENSVCSGREGDVGANCMVDALNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQACVEGCKNLGMDKKTRSWWKRFISKRKGRDAASASQVSKQTSETPKINQMKVRQNKKRCMEFTALCIGQEIQAHKGFIWTMKFSPDGQYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGCEVKDGKSSFGRKKPSYAPVVIPDKIFQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMDKTVRLWQVGHDECLNVFRHNNYVTCIQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWADVRDVITAICYQPDGKGFIVGSVTGTCCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQFSQEESQKVMITSEDSKLRILDGIDVVYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVYVWNYDGFCSQSSKQMKSVQSCEHFFFEGVSVAIPWSDTGAEKKGLGSDSLRQSPPTQDHLEATSWIRDSERFSLGNWFSMDGSCRGGATWPEEKLPLWGAPEHDHHHHDHQQQQQHNDVQNHNHLALSEAWGLVIATAGWDGTIRTFHNYGLPVRL* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1475 674 MobiDBLite consensus disorder prediction 615 633 - -
Vvi4g1475 674 PANTHER WD REPEAT DOMAIN 44 5 671 IPR040324 -
Vvi4g1475 674 SUPERFAMILY WD40 repeat-like 225 665 IPR036322 GO:0005515
Vvi4g1475 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 386 - -
Vvi4g1475 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 346 - -
Vvi4g1475 674 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Vvi4g1475 674 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Vvi4g1475 674 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Vvi4g1475 674 MobiDBLite consensus disorder prediction 186 206 - -
Vvi4g1475 674 FunFam WD repeat-containing protein 44 211 553 - -
Vvi4g1475 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 258 - -
Vvi4g1475 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 354 IPR001680 GO:0005515
Vvi4g1475 674 MobiDBLite consensus disorder prediction 187 205 - -
Vvi4g1475 674 Pfam WD domain, G-beta repeat 227 258 IPR001680 GO:0005515
Vvi4g1475 674 Pfam WD domain, G-beta repeat 350 386 IPR001680 GO:0005515
Vvi4g1475 674 Pfam WD domain, G-beta repeat 309 344 IPR001680 GO:0005515
Vvi4g1475 674 SMART WD40_4 433 479 IPR001680 GO:0005515
Vvi4g1475 674 SMART WD40_4 480 521 IPR001680 GO:0005515
Vvi4g1475 674 SMART WD40_4 630 666 IPR001680 GO:0005515
Vvi4g1475 674 SMART WD40_4 307 345 IPR001680 GO:0005515
Vvi4g1475 674 SMART WD40_4 348 387 IPR001680 GO:0005515
Vvi4g1475 674 SMART WD40_4 389 428 IPR001680 GO:0005515
Vvi4g1475 674 SMART WD40_4 220 259 IPR001680 GO:0005515
Vvi4g1475 674 MobiDBLite consensus disorder prediction 614 638 - -
Vvi4g1475 674 Gene3D - 213 546 IPR015943 GO:0005515
Vvi4g1475 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 396 IPR001680 GO:0005515
Vvi4g1475 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 258 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1475 Vvi-Chr4 22097937 22101390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1475 211 428 Miscellaneous Gene Families AT5G08390 22.321 5.51e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1475 K20241 - vvi:100247276 1342.41