Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1473 ATGGTGAGAGACGACCCTCAGCTCAGCGCGGCCAAGCGCGCGTATCGGAATGCGTCGATGGAGGGAAATCGGCAGGAAGAGGCGAGGTGGGCCAACTTGATCGGCGACATATTCAAGAATAGAGGCGAGTACGTGGAAGCCCTAAAATGGCTTCGTATTGATTATGATATCTCCATGAAATACCTCCCTGAGAAGCAACTCCTTCCCACTTGCCAGTCCGTCGGCGAACTCCTCCTCCGTCTCGAGAATTTCAAGGATGCCCTTATTTATCAGAAAAAGCATCTAGAGTTAGCCAAGGACACTAATGACCTTGTTGAGCAGCAAAGAGCCAGTACCCAACTTGGTAGAACTTATCATGAAATCTTTCTAAGTTCGGATGATGACCACTACTCGGTTCGAAATGCCAAGAAGTATTTCAAGTCTGCCATGAGACTTGCTCAAACTCTCAAGGAGAACCCACCATCTAATAAATCTTCTTTCCTCAAGGAATTCATTGATGCACATAATAACATTGGAATGCTTGAAATGGATCTTGATAACTTAGAGGAAGCCCATAAAATTCTTACTAAGGGATTAAAGATATGTGATGAAGAAGAGGTGATTGATGATGATGATGGACGTAGTAGGCTCCACCACAACCTTGGACGTGTTTACATGGAGCTGAGGAAGTGGGATAAAGCTCGAGAGCACATTGAGAAGGATATCATAATCTGCAAGAGGATTGGGCATTTCCAAGGAGAGGCAAAGGGGTATATCAATCTTGGAGAATTGCATTACAGGGTACAAAAGTATGAGGAGGCAAATCTCTGCTATCAGAAGGCACTTGATCTAGCAAAATCCATGGAAGATGAGGATGCTTTGGTTAGTCAAATTGATGAGAACATTGTAACTGTAAAAAAAGCAGTGAAAGTAATGGCTGATATGCAGAAAGAAGAGCAGAATCTCAAGAAGCTAGCAAGAAACATGGCCACAGCAAGAGGCACACCGGGTGAACGGAGATGCCTTCTGCAACAGAATGCATCTCTTGATCTTCTCATTGAAAAATCAAGCATGATTTTTGCATGGCTTAAACATCGTGAATTTGCCAAAAGGAAGAAGAGAATAGCAAATGAACTTTGTGACAAAGAAAAGCTTAGTGATTCATTTCTGGTTATTGGAGAGTCATACCAAAAGCTCAGAAACTTCGACAAAGCTCTTAAATGGTACACCAAAAGCTGGGAAACATACAAGTCAATCAACAATTTGGAGGGACAAGCATTGGCGAAGATTAACATTGGAGATGTATTGGACTCTGATGGTAATTGGGCAGGTGCCCTAGATGCATTTGAAGAGGGTTACAGGCATTTCCTATTATATTATAGAGGGATTGCTGTTCAAGAAAATCTTCCTTCTGTACAGCTTTCTGCGCTTGAAAATATGCACTATAGTCACATGATAAGATTTGACAATCTTGAAGAGGCTAGGAGGTTGCAGTATTTAATTGACAAATTGAAGCAGTCTGGAAATGAAAAGCATGAAGGGAGAAATATTGCAGAGGACTGCTGCTCTGAAACTGATACAGAAAGGGATGATTGCTTATCCAATAGTAGGTCTGATCCAAGCTGTTCAGTAAAGAAGGGTAAATCCAAATCAGATCGTGGTGAATTTAAGGATGATGTACCTCTGATTTCACTTCTTCAAAGCAATAAAAAATTGCCCAAGTGGAACATTGCTCATGTAGACGAAGTCCTGCCAACTGGTGCCTCACACAAAAGTTCATCAACATCAACCAGTAATCAGCAAACAGTTGGCCGCAAACGTGTTCGGGTAGTCCTTTCTGATGATGAAGGCGAAATGCAGGATGAGGTGGCTTGCTCTAATTTTGAATGTGGAAGGCTTCATAAATGCCCAGTGGAGGATGTGACCATCTTCTTAATTCTTGTGGTTTGGCAGGATGTTTCAGCAATTCCTTCTAAATGTGCTATCAGTTCGTCTACTCCTATGATACTAGAAGAAAGCACTAGTTCATATAAATTGAGGACTCCTAACGTAACTGCTCAATTTGGCAAAAGCATTGTCAGAATTTTTATTTCTTCCAAATTTTCTCTGAGTGGTTTTAAATATGATACTAATGTCTCTGAAAACCTGTTGCAGAAGCATAGTGCTGCTGATCTCAAGTTGCACACTTCTGAAGGTGCATATGGTCAATATATAGCATTCAAAATTGAAAATGACCTGATACAAATAGAAGCAGCCCCATGTATGGTTGATGACATGCTGAGCATTGAGTCTCTCAAGGTTGAAGTTGCATGCTTATACTATCTACAACTTCCTGTAGACAAGAGGTCAAGGGGTCTATTGCCCATCATTCAGCACATGAGATGTGGTGGGAAAGCTTTGGAATCCTTTGAAGCAATCGGAACTTTTAAGGACACTTTGGGAAATGGCTGGGTTGAAGTCTTCGTTGATGGATGGGTTCAAAAGCGATTGATAAAGCTGTATGTTGACTGCTGCAAGGAGTTGTCTGAGACTCCCAATATTAAGTTGCTTAAGAAACTGTACAATTTGGAGGTTTCAGAGGATGAAGTTATGGTGTCTGAATGTGACTTGCAAGATATATCAATAATGCCGTTACTGAATGCTTTGCATGTCCATAAGACCATTGCCATGTTAGACCTTTCTCACAATATGTTGGGGAATGGAACAATGGAGAAACTTCAACAAGTATTCATATCATCAGGCCAAAAATATGGTGGCTTGGCTTTGGATTTGCACTGCAATCGATTTGGTCCTACTACCTTGTTCCAGATTTGTGAATGCCCTGTGCTATTTGCTCGATTGGAAGTGCTTAATATCTCTGGGAACCGTCTCACTGATGCATGTGGATCTTACCTTTCAACTATCTTGGAAAAGTGCAAAGCCCTTTATTACTTGAATATAGAGCGGTGTTCTATCACGTCTAGAACTGTTCAGAAGGTTGCTGATGCACTTGATTCTCAATCTGTACTTGCACAGCTTTGTTTGGGTATTCCGGATTTTTTATTAAATATCTCAATAACAATATTCAACAGGTTTCTTGTTATTTGCTTGGTAGGGTTTTTAATGCTCACTTCTTTAACAGGACATAACAATCCTATATCTGGAAATTCTATCATGAATCTGATGGGCAAACTTTCCACTTTAGAAAGATTTTCAGAGCTGAATCTGAATGGTTTAAAGCTAAGCAAGACTGTAGTTGATAGCCTCTGCCAACTTGTCAAATCCTCATGTTTATCAGGATTAATGCTTGGTGGTAGTAGTATTGGAACTGATGGTGCACTACAGTTGACTAAGTCCTTGTTCAGTGGGGCCCAAGAGCTTGTGAAACTTGACTTATCTTATTGTGGACTAACATCTGAGTACATTACCAATCTAAATGCTGAAGTTCCTATGGTTGGTGGTATTCTTGAGATAAACCTTGGAGGAAATCCCGTTATGCAAAAGGGTGGCAGTGCATTAGCATCACTACTCATGAATCCTCATTGTTGTCTCAAAGTTTTGGTGCTTAACAACTGTCAGCTTGGCCTTGCTGGAGTTCTTCAAATAATTCAGGCACTATCAGAGAATGACTCTCTGGAAGAACTCAATGTTGCTGGAAATGCCGATCTGGACAGACATTGTACTTCACAAAATAACTTAAAAGCATTAGAAAGCTCAGAGACCTTTCCGCAAATTCTCAATATTTCTGTTTCTTCCCCCAAGGTGTGCGTACTAAAGGAAGTTGCTGCTGCTCAAGAGGGGTCATGTATTATGAACACAGACTACAATCAGCTTGAGGTTGCCGATAGTGAAGATGATCCAATTACAGCAGAACCTGCTGCATCTTATGATGACAGTTGCACAAATTCATGTAAAAGGATGCTTCAGTTTTCTGAGAGTGAATTCATTCAAGGGCTCTCAACTGCCATTGGCATGGCAAAGAAGTTGCAATTACTAGATCTTAGCAATAATGGTTTCTCAACACAAGATACAGAAACAATATACACTGCATGGTCATTGGGTTCAAGATCTGGTTTGGCTCAGAGGCACATTAAGGAACAGACAGTCCATTTGTTGGTGCGGGGGCAGAAGTGCTGTGGAGTGAAACCCTGCTGCAAAAGAGACTGA 4125 0.4109 MVRDDPQLSAAKRAYRNASMEGNRQEEARWANLIGDIFKNRGEYVEALKWLRIDYDISMKYLPEKQLLPTCQSVGELLLRLENFKDALIYQKKHLELAKDTNDLVEQQRASTQLGRTYHEIFLSSDDDHYSVRNAKKYFKSAMRLAQTLKENPPSNKSSFLKEFIDAHNNIGMLEMDLDNLEEAHKILTKGLKICDEEEVIDDDDGRSRLHHNLGRVYMELRKWDKAREHIEKDIIICKRIGHFQGEAKGYINLGELHYRVQKYEEANLCYQKALDLAKSMEDEDALVSQIDENIVTVKKAVKVMADMQKEEQNLKKLARNMATARGTPGERRCLLQQNASLDLLIEKSSMIFAWLKHREFAKRKKRIANELCDKEKLSDSFLVIGESYQKLRNFDKALKWYTKSWETYKSINNLEGQALAKINIGDVLDSDGNWAGALDAFEEGYRHFLLYYRGIAVQENLPSVQLSALENMHYSHMIRFDNLEEARRLQYLIDKLKQSGNEKHEGRNIAEDCCSETDTERDDCLSNSRSDPSCSVKKGKSKSDRGEFKDDVPLISLLQSNKKLPKWNIAHVDEVLPTGASHKSSSTSTSNQQTVGRKRVRVVLSDDEGEMQDEVACSNFECGRLHKCPVEDVTIFLILVVWQDVSAIPSKCAISSSTPMILEESTSSYKLRTPNVTAQFGKSIVRIFISSKFSLSGFKYDTNVSENLLQKHSAADLKLHTSEGAYGQYIAFKIENDLIQIEAAPCMVDDMLSIESLKVEVACLYYLQLPVDKRSRGLLPIIQHMRCGGKALESFEAIGTFKDTLGNGWVEVFVDGWVQKRLIKLYVDCCKELSETPNIKLLKKLYNLEVSEDEVMVSECDLQDISIMPLLNALHVHKTIAMLDLSHNMLGNGTMEKLQQVFISSGQKYGGLALDLHCNRFGPTTLFQICECPVLFARLEVLNISGNRLTDACGSYLSTILEKCKALYYLNIERCSITSRTVQKVADALDSQSVLAQLCLGIPDFLLNISITIFNRFLVICLVGFLMLTSLTGHNNPISGNSIMNLMGKLSTLERFSELNLNGLKLSKTVVDSLCQLVKSSCLSGLMLGGSSIGTDGALQLTKSLFSGAQELVKLDLSYCGLTSEYITNLNAEVPMVGGILEINLGGNPVMQKGGSALASLLMNPHCCLKVLVLNNCQLGLAGVLQIIQALSENDSLEELNVAGNADLDRHCTSQNNLKALESSETFPQILNISVSSPKVCVLKEVAAAQEGSCIMNTDYNQLEVADSEDDPITAEPAASYDDSCTNSCKRMLQFSESEFIQGLSTAIGMAKKLQLLDLSNNGFSTQDTETIYTAWSLGSRSGLAQRHIKEQTVHLLVRGQKCCGVKPCCKRD* 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1473 1374 Gene3D Tetratricopeptide repeat domain 355 448 IPR011990 GO:0005515
Vvi4g1473 1374 Gene3D Ribonuclease Inhibitor 820 1008 IPR032675 -
Vvi4g1473 1374 MobiDBLite consensus disorder prediction 519 547 - -
Vvi4g1473 1374 Coils Coil 298 328 - -
Vvi4g1473 1374 SUPERFAMILY RNI-like 857 1210 - -
Vvi4g1473 1374 SMART LRR_RI_2 878 905 - -
Vvi4g1473 1374 SMART LRR_RI_2 1081 1108 - -
Vvi4g1473 1374 SMART LRR_RI_2 1167 1194 - -
Vvi4g1473 1374 SMART LRR_RI_2 937 964 - -
Vvi4g1473 1374 SMART LRR_RI_2 1138 1165 - -
Vvi4g1473 1374 Pfam Tetratricopeptide repeat 208 280 - -
Vvi4g1473 1374 MobiDBLite consensus disorder prediction 579 598 - -
Vvi4g1473 1374 FunFam Protein TONSOKU 4 321 - -
Vvi4g1473 1374 SUPERFAMILY TPR-like 156 284 IPR011990 GO:0005515
Vvi4g1473 1374 SUPERFAMILY TPR-like 19 153 IPR011990 GO:0005515
Vvi4g1473 1374 Gene3D Ribonuclease Inhibitor 1009 1357 IPR032675 -
Vvi4g1473 1374 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Vvi4g1473 1374 PANTHER PROTEIN TONSOKU 1032 1374 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Vvi4g1473 1374 MobiDBLite consensus disorder prediction 580 598 - -
Vvi4g1473 1374 Gene3D Tetratricopeptide repeat domain 5 309 IPR011990 GO:0005515
Vvi4g1473 1374 SMART tpr_5 208 241 IPR019734 GO:0005515
Vvi4g1473 1374 SMART tpr_5 68 101 IPR019734 GO:0005515
Vvi4g1473 1374 SMART tpr_5 165 198 IPR019734 GO:0005515
Vvi4g1473 1374 SMART tpr_5 379 412 IPR019734 GO:0005515
Vvi4g1473 1374 SMART tpr_5 248 281 IPR019734 GO:0005515
Vvi4g1473 1374 SMART tpr_5 419 452 IPR019734 GO:0005515
Vvi4g1473 1374 SUPERFAMILY HCP-like 245 447 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1473 - - vvi:100264422 2485.29