Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1463 ATGGTCATCAACACAGTTCTCTCAGTCATGGCTTACGACTATCTGCCCAAGAAGCTGGGCGTCTATCTATCCGATGATGGTGGGTCATGTCTAACATTTTATGCTCTCCTAGAGGTCTCTCAGTTCTCAAAGATATGGCTACCATTTTGCAAGAAATTCAAAGTTGAACCCAGATGCCCAGAAGCTTATTTTACCTCTACTCCTGAACCGCATCATGATGATCCTCTAATGGTTGAGGAATGGTCATCCATCAAGAAATTATATGAAGATATGAGGAACCGGATAGAATCTACTATGAAGGTGGGCCAAATTTCAGAAGAAATACGCAAACAACACAAAGGATTTGGAGAGTGGGACTTGGTTTCCGATCCACGGAATCATCAAACCATTCTTCAAGTACTTCTTACCGTCTTTTATGCTTTACAAGCGTATCCTATTATTCTCATCTGA 450 0.4133 MVINTVLSVMAYDYLPKKLGVYLSDDGGSCLTFYALLEVSQFSKIWLPFCKKFKVEPRCPEAYFTSTPEPHHDDPLMVEEWSSIKKLYEDMRNRIESTMKVGQISEEIRKQHKGFGEWDLVSDPRNHQTILQVLLTVFYALQAYPIILI* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1463 149 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 135 - -
Vvi4g1463 149 Pfam Cellulose synthase 3 136 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1463 Vvi-Chr4 21883381 21884517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1463 1 135 Glycosyltransferase AT1G55850 53.676 3.31e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1463 - - vvi:100260762 281.952