LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g1443	ATGGCATCTCTCGGAAACATGAACTCAGAACCACCAGAAATCGAACAAATAGTCACTGAATTCTTTGCGAAAAGTCTCCACATAATACTGGAGTCGAGGTCTCCTTATGCGTCCTCAAGGAATTACAGTGGAGACCCAACTATATCTCCTTCTTCTTCATCCTCCTCCTCCTCGAGTGTGAGGCCACGAGATAAGTGGTTTAGATTAGCATTGCGGGACTGCCCAGCGGCACTAGAGAATATTGATTTCTGGCGCCAAAGCAATCTTGAACCAATGGTGGTGGATGTGATTTTGGTTCAGCGACCACATGACTGGGACCCAATAAATTGTATTCCAAGGAGGGATCTTCTTAGGAATACTTCATTGAAGGAGCAGTCTCGAAATTCTTGGGGTTCTGAGCAGGAAGAGTTTGGGTGTGTGGCAAAGAGTGAAAAGATCATAGAGAGATGGGTAGTGCAATATGAGAGTCGAAAGAATAGTAGTCTGGGGAGTAAGAGATCGAGTAATTCAAATTCACACAATTTACTTAAGATACAGCACACATTATATAAGAAATCGATAATACTATTGAGGTCTTTGTATTTAACTGTTAGGCTTTTACCTGCATACAAACTATACCATGATCTCAATTCCTCTCAAATTCATGCATTTACTCTTGCTCATCGGGTATCTTCTATTATTGAGCCTTTCACTGGTAGAGAAGAAGTAGAAATGCAGCGATTTTGCTTCACCCCTGTGGACACTTGTTGTGGTAGGCTCTGTCTTTCTGTATTGTATCGTGCCTCACTCTTGGATGTGAGTTCTGAACCATCGACCCCCATGTCCCCACAAGTTATAGCTGATTATGTTGGAAGTCCAATGGCGGATCCCCTTAAGAGATTTCCATCCCTTCCCACGACATGTTCTCCATCTTCGGCACCATTCTCAAGGCGGCATAGTTGGAGCTATGACCTTTATAGAGCTTCGCCTCCTTCAGTTTCTTTCTCACCTTCTCCTACACATTCAGAGTCTCGTGCTTCAGTTTCTAACCCTGCTTCCCGGCGTCTCCCGCCTATGAGCTTGCCTCCTCATCCACCTGAAATGTCTGCAGCTCACCACAAGAATACAGGTTTTGACGAGTATTGGCCTTCCCCAACAATTTCTCCCCCCTCCTCTGCATCGCCACCAACAAATACTCTGGGTAGTCATCTGCCAAAATCACTTTTACGTTCTGAAAGTGCTCCTGTTAGCATACCTGCAACCAAGCCTGTTAATACTCCTGCTTTGCCCTACAAACATAATTTGCCTCCCTCTCCTCCTCTTAAAGGTGCTGGGTGCAGTAATTCTAAGACTGATAGAAGGACATGTCAAATTCGAACTGGTACAACAGTTGATAAGATCTCTATTGGGAAAGATGAAACTGGAAAAATTTCTGGGTTGAAGATATCATCTGGTAGCTCACAACCGGTTTCGGTTTCCCGAAGCTCCAGTAGGTTGTCTCTCCCAGATGATTTTGATGGTTCTGAATTTTCCTGCCCATTTATCACGGATGATGATGATGTGACAGACTCATACCGTAGACCTGAGTCTTATGATCATAAAAGATATAGACATGAGCCTGTTGAGCCAGGGGGAGTATTGCGAGTCCCAAAGTCCCAAGGTGCTGAAGTTGGTGCTCTTGTACTGATGTTGAAGACAGCTGCTCCTCTTTGCCAAGACTTGTCCAGTTCCACAAATTTTTCACAAGCCCCCAGGTCTGAAACATGGAACAACAGCATCCAACCACCCGACCAGATCTCTGAGGCACCAGCAGTTCAGGATGCTACTTCTTCAAGGGTAGCGTCTTCTGGGCTTGTTTTCTCAAAGACAACAGCTGATGCACTAGAGGAGCTCAAAGTTTACAAGGATATGAAAAATGATTTGATCAAGCAAGGTCTTAGGTCCCAGACATCGACTAATTTGGCTTCAGCTGCAGAAGTTTCCAGCAGAGGTACGACCGGATGA	1983	0.4488	MASLGNMNSEPPEIEQIVTEFFAKSLHIILESRSPYASSRNYSGDPTISPSSSSSSSSSVRPRDKWFRLALRDCPAALENIDFWRQSNLEPMVVDVILVQRPHDWDPINCIPRRDLLRNTSLKEQSRNSWGSEQEEFGCVAKSEKIIERWVVQYESRKNSSLGSKRSSNSNSHNLLKIQHTLYKKSIILLRSLYLTVRLLPAYKLYHDLNSSQIHAFTLAHRVSSIIEPFTGREEVEMQRFCFTPVDTCCGRLCLSVLYRASLLDVSSEPSTPMSPQVIADYVGSPMADPLKRFPSLPTTCSPSSAPFSRRHSWSYDLYRASPPSVSFSPSPTHSESRASVSNPASRRLPPMSLPPHPPEMSAAHHKNTGFDEYWPSPTISPPSSASPPTNTLGSHLPKSLLRSESAPVSIPATKPVNTPALPYKHNLPPSPPLKGAGCSNSKTDRRTCQIRTGTTVDKISIGKDETGKISGLKISSGSSQPVSVSRSSSRLSLPDDFDGSEFSCPFITDDDDVTDSYRRPESYDHKRYRHEPVEPGGVLRVPKSQGAEVGALVLMLKTAAPLCQDLSSSTNFSQAPRSETWNNSIQPPDQISEAPAVQDATSSRVASSGLVFSKTTADALEELKVYKDMKNDLIKQGLRSQTSTNLASAAEVSSRGTTG*	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g1443	660	Pfam	Autophagy-related protein 13	18	262	IPR018731	GO:0006914\|GO:1990316
	Vvi4g1443	660	Gene3D	HORMA domain	12	265	IPR036570	-
	Vvi4g1443	660	MobiDBLite	consensus disorder prediction	36	60	-	-
	Vvi4g1443	660	MobiDBLite	consensus disorder prediction	473	493	-	-
	Vvi4g1443	660	MobiDBLite	consensus disorder prediction	325	447	-	-
	Vvi4g1443	660	MobiDBLite	consensus disorder prediction	325	347	-	-
	Vvi4g1443	660	MobiDBLite	consensus disorder prediction	374	399	-	-
	Vvi4g1443	660	PANTHER	UNCHARACTERIZED	2	644	IPR040182	GO:0000045
	Vvi4g1443	660	MobiDBLite	consensus disorder prediction	570	609	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi4g1443	Vvi-Chr4	21482849	21488842	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g1443	K08331		-	vvi:100245377	1206.43