Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1437 ATGGCGATAAGATGTACGGATTTCGGGGTGAAAAGTTGGTTTGCTTCCAACCCTAGAAATTATGCTTCGATAAATGTTAGGATTTTCACCATCAGATGCTCCTCAGGTGCCGCTGCCACCGCCGTCGGTTTGGGTGAAAGACCCTGGAAAACATCCGATGCTAGACTTGTTCTTGAAGATGGCTCAGTCTGGAAGGCAAAGTCATTTGGTGCTTCAGGAACTCAAGTTGGAGAAGTGGTTTTCAATACATCTTTAACAGGATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGATGACGAAGAATCAAGTCAATGCTTTCTTGCTGGTTTAGTGATCAGAAGTCTAAGTATCGGTACTTCAAATTGGAGATGTGCAGAGACACTTGGTGACTATTTAGCAGAAAGGAACATTATGGGCATATATGATGTCGATACCCGGGCCATTACCCGTAGATTAAGACAAGATGGAAGCCTTATAGGTGTACTGAGCACAGAAGACTCTAAAACAGATGAGGAACTACTGAAAATTTCTTGCTCATGGGACATTGTGGGTGTTGATTTAATAAGTGGTGTTTCATGCAATTCTCCATATGAGTGGGTTGATAAAACAGGCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGTGTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCATCCTATGGCTGTAAAATCACAGTTGTCCCATCAACATGGCCAGCTTCAGAGACCTTAAAGATGAAGCCTGATGGAGTTCTTTTCAGCAATGGCCCAGGAGACCCATCTGCAGTTCCATATGCTGTTGAAACAGTTAAAGAAATATTGGGAAAGGTTCCTGTTTTTGGCATTTGTATGGGACATCAGTTGCTTGGCCAGGCATTGGGTGGTAAAACCTTTAAAATGAAGTTTGGTCACCATGGTGGAAATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTGACGCATGTCAACCTTAATGATGGAAGTTGTGCAGGCCTTGCCTATCCTGCTCTGAATATCATGTCTCTTCAATACCACCCTGAAGCTTCTCCAGGGCCTCATGATTCGGATCCTGCCTTCAGGGAATTCATCCAGTTGATGAAGCAAGTAAAGCAAAATGCCTGA 1281 0.4325 MAIRCTDFGVKSWFASNPRNYASINVRIFTIRCSSGAAATAVGLGERPWKTSDARLVLEDGSVWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESSQCFLAGLVIRSLSIGTSNWRCAETLGDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEDSKTDEELLKISCSWDIVGVDLISGVSCNSPYEWVDKTGSEWDFNSNETAGETFRVIAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSNGPGDPSAVPYAVETVKEILGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRSGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAYPALNIMSLQYHPEASPGPHDSDPAFREFIQLMKQVKQNA* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1437 426 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 56 180 IPR002474 -
Vvi4g1437 426 PRINTS Anthranilate synthase component II signature 309 320 - -
Vvi4g1437 426 PRINTS Anthranilate synthase component II signature 394 407 - -
Vvi4g1437 426 PRINTS Anthranilate synthase component II signature 282 291 - -
Vvi4g1437 426 FunFam Carbamoyl-phosphate synthase small chain 51 200 - -
Vvi4g1437 426 Hamap Carbamoyl-phosphate synthase small chain [carA]. 52 423 IPR006274 GO:0004088|GO:0006207|GO:0006541
Vvi4g1437 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 351 362 - -
Vvi4g1437 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 279 293 - -
Vvi4g1437 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 240 254 - -
Vvi4g1437 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 309 325 - -
Vvi4g1437 426 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 326 343 - -
Vvi4g1437 426 CDD GATase1_CPSase 240 416 IPR035686 -
Vvi4g1437 426 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 239 425 - -
Vvi4g1437 426 Gene3D - 200 424 IPR029062 -
Vvi4g1437 426 PRINTS Glutamine amidotransferase superfamily signature 309 320 - -
Vvi4g1437 426 PRINTS Glutamine amidotransferase superfamily signature 282 291 - -
Vvi4g1437 426 PRINTS Glutamine amidotransferase superfamily signature 394 407 - -
Vvi4g1437 426 Pfam Glutamine amidotransferase class-I 243 417 IPR017926 -
Vvi4g1437 426 SUPERFAMILY Class I glutamine amidotransferase-like 232 422 IPR029062 -
Vvi4g1437 426 Gene3D - 51 198 IPR036480 -
Vvi4g1437 426 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 53 192 IPR036480 -
Vvi4g1437 426 SMART CPSase_sm_chain_2 52 182 IPR002474 -
Vvi4g1437 426 FunFam carbamoyl-phosphate synthase small chain, chloroplastic 201 423 - -
Vvi4g1437 426 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 25 419 - -
Vvi4g1437 426 NCBIfam glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 54 421 IPR006274 GO:0004088|GO:0006207|GO:0006541
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1437 Vvi-Chr4 21388610 21395290 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1437 K01956 - vvi:100255702 870.922