Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1409 ATGCTTCAAACATTTTTCAAAATACTCATGAGATCAGGTTGGTCTGATAGGTTCTCGGGGCAAACAGGGTGCAACTTTGACGGATCTGGGTTGGGTTCTTGCGTCATTGGCGATTGTGGGCCAAGGACCATCGAATGCAACGACGTCGGTGCTGCCCCACTAGCAACACCGACGGAGTTCACTCTTAATACCGGTGGGCAAGACTTCTACAACGTGAGCCTCATCGATGGCTGCAACATGTCGATGAGAGTGGAAGGGAGTGGTTGGTCAGGAATGTACGCATCGATGGGCTGCACGGTGGATCTGAACCAGGGCTATCCGACGGAGCTGAAGGTCGGAGACGACAGCGTGTGCAGGAGTGCGTGCGAGGCATTTGGGAGCCCGGAGTACAGTTGCAGCAGCGCGTACAGTACACCTGCCACCTAA 426 0.5446 MLQTFFKILMRSGWSDRFSGQTGCNFDGSGLGSCVIGDCGPRTIECNDVGAAPLATPTEFTLNTGGQDFYNVSLIDGCNMSMRVEGSGWSGMYASMGCTVDLNQGYPTELKVGDDSVCRSACEAFGSPEYSCSSAYSTPAT* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1409 141 ProSiteProfiles Thaumatin family profile. 1 141 IPR001938 -
Vvi4g1409 141 PANTHER OS03G0233200 PROTEIN 8 140 IPR001938 -
Vvi4g1409 141 Pfam Thaumatin family 8 141 IPR001938 -
Vvi4g1409 141 PIRSF PR5 3 141 IPR001938 -
Vvi4g1409 141 Gene3D Thaumatin 3 141 IPR037176 -
Vvi4g1409 141 PRINTS Pathogenesis-related protein signature 68 84 IPR001938 -
Vvi4g1409 141 PRINTS Pathogenesis-related protein signature 17 28 IPR001938 -
Vvi4g1409 141 SMART tha2 3 140 IPR001938 -
Vvi4g1409 141 SUPERFAMILY Osmotin, thaumatin-like protein 10 139 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1409 Vvi-Chr4 21004227 21005979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1409 14 140 Receptor kinase-like Gene Family AT5G38280 42.647 3.14e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1409 - - vvi:104879199 280.026