Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1402 ATGGCGGCTCTCTCGAGCTTCTTCAAGAGAAAATCGTCGATACCCCTTACCAGATGGTTCTCCACTCAACCTATCCTCGAGTCTCCGTCTTTTTCCCGGAGAATCAGAGATCTGCCCAAGGATCTTCCAGGGACCAACATAAAAAAAGAAGTTTCTCAGCTTATTGGGAAGACTCCTCTGGTTTTTCTGAACAAAGTCACAGAAGGGTGTGGAGCTTATGTAGCTGTCAAGCAAGAGATGATGCAACCCACTGCTAGCATCAAAGACAGGCCAGCACTAGCCATGATGACAGACGCAGAAAACAAACATTTGATCACTCCGGGGAAGACTGTGCTGATTGAGCCCACATCGGGAAATATGGGGATTAGCATGGCGTTTATGGCAGCCATGAAAGGGTACAAGATGGTTCTGACCATGCCTTCCTACACAAGCTTGGAGAGGAGAGTGACCATGAGAGCATTTGGGGCTGATTTGATTCTCACCGATCCCACCAAGGGGATGGGAGGAACAGTCAAAAAGGCTTATGAGCTTTTGGAATCCACCCCAGATGCTTTCATGCTTCAACAATTTTCAAATCCTGCCAATACCCAGGTCCAGAGATATGGGAGGATACTAATGGACAAGTTGACATTTATAATGGGAATTGGCAGCGGTGGCACTGTCTCTGGGGTCGGACGTTATCTCAAATCCCAGAATCCTAATGTTAAGATATATGGACTTGAGCCAACTGAAAGCAACGTACTGAATGGTGGTAAGCCAGGTCCTCATCATATTACGGGCAATGGGGTTGGATTCAAACCCGATATCCTGGACATGGATGTAATGGAAGAAGTTCTCATGGTTTCTAGTGAAGATGCAGTCAACATGGCCAGGCAGTTGGCACTGAAGGAAGGGCTCATGGTGGGGATATCATCAGGAGCTAATACAGTTGCAGCGCTAAGGCTAGCAAGAATGCCAGAGAACAGAGGCAAACTGATAGTGACTGTTCATCCAAGTTTTGGGGAGCGGTACTTGTCATCTGTCCTGTTTCAAGAACTGAGGAAAGAAGCTGAAAACATGCAACCTGTTTCTGTTGATTGA 1080 0.4685 MAALSSFFKRKSSIPLTRWFSTQPILESPSFSRRIRDLPKDLPGTNIKKEVSQLIGKTPLVFLNKVTEGCGAYVAVKQEMMQPTASIKDRPALAMMTDAENKHLITPGKTVLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVQRYGRILMDKLTFIMGIGSGGTVSGVGRYLKSQNPNVKIYGLEPTESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEEVLMVSSEDAVNMARQLALKEGLMVGISSGANTVAALRLARMPENRGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPVSVD* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1402 359 CDD CBS_like 56 339 - -
Vvi4g1402 359 NCBIfam cysteine synthase 52 343 IPR005856 GO:0004124|GO:0006535
Vvi4g1402 359 Gene3D - 82 189 IPR036052 -
Vvi4g1402 359 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 47 348 IPR036052 -
Vvi4g1402 359 Pfam Pyridoxal-phosphate dependent enzyme 52 331 IPR001926 -
Vvi4g1402 359 PANTHER CYSTATHIONINE BETA-SYNTHASE 47 349 - -
Vvi4g1402 359 NCBIfam cysteine synthase A 52 343 IPR005859 GO:0004124|GO:0006535
Vvi4g1402 359 FunFam Cysteine synthase 89 188 - -
Vvi4g1402 359 Gene3D - 53 339 IPR036052 -
Vvi4g1402 359 FunFam Cysteine synthase 189 339 - -
Vvi4g1402 359 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 77 95 IPR001216 GO:0006535
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1402 Vvi-Chr4 20937407 20940046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1402 1 303 Miscellaneous Gene Families AT3G61440 71.111 1.96e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1402 K13034 - vvi:100255091 638.262