Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1400 ATGTTGCGAGGTATGATTATGCGGGATGGAAAATTAAAGAGAAGTGAGAGAGAGATGGAAAAGATGGTACCGGAGGAAGAAATAGTGATAGTGGGGGGAGGAATCGCTGGGCTGGCCACCGCGGTGGCGCTACAAAGAGTTGGGATTAGAGCGTTGGTTTTGGAGAGATCTGATGGCCTCCGAGCCACTGGTGCTGCTCTCGGCCTCTTCCCAAATGCTTGGCGCGCTCTTGATGCCCTGGGCGTCGCTCATAAACTCACTGCCGTCTATGCCGTCCGCAAAAAGATGTGCATAACAAATGTTGCCACTGGAGCGGTCCAAGAAGTCTCCCTCATTAGAAACAATAGAGGTGGACCCATCACAGTACATCGCAAGGCGTTACTCGAGAGTCTGGCAGAGGAGCTGCCACGCCACTCGATCCGATTCTCATCCAAGCCCATCTCCATTGAAGCCCAGGCCCAAGAAGGTCCATATACCATACGCTTGGAAGATGGAACTGTGATTACAACCAAGGTTTTGATAGGGTGTGATGGGGTGAACTCGTTTGTGGCTCGTAAATTGGGACTGACCGAGCCGGTGAACTCAGGTCGATCGTCTGTGGTTGCGCTGGCGGTGTTTCCAGAGGGTCATGGCGTGCGTGAGCATGTGCTGCAATTTTTGGATGTGGGCAAAAGGGCTGGCATCGTCCCTCTAAATGATAAAGATATTTACTGGTTCCTCACTTTCAATACTCCTAAAGGTGAGACCATGACAAAAGACCCGCAAGAAATACAAAAACAAGTGATTGAGAATTATGCCAAGGACCTCCCTCCAATATACGCTGAAGTGGTCCGCCACTGCGATCTTTCTACCTTGACTTTGGCTCCACTGAGGCTGAGACTTCCATGGGACCTCATATTTGGAAATGTAAGCAAAGGGAACATGACAGTGGTAGGTGATGCCATGCACCCAATGACCCCTGACCTAGGCCAGGGTGGTTGTGCAGCCCTGGAGGACGCAGTTGTCCTAGGCCGCCACATCGGAAAATCATTCATTGATAACGGGAGGCTGGTGCCAGGAGCGGTGGCCGAAGCCATAGAGGGATACGTGAAGGAAAGGAGGTGGCGCGCTGCTTGGTTGATAGCAGGGTCATATTTTTCAGGGTGGGCGCAGGTAGGCAGAGAAGGATGGTTGATGAAGATGTTCAGAGATATGATATTTTATAGGTTTGTTTTGAAGAGGCTTATTGGCATTGCAGACTATGACTGTGGGAAGCTCCCACTATTGGATGATCAAAATAAGACTCATTAG 1290 0.5047 MLRGMIMRDGKLKRSEREMEKMVPEEEIVIVGGGIAGLATAVALQRVGIRALVLERSDGLRATGAALGLFPNAWRALDALGVAHKLTAVYAVRKKMCITNVATGAVQEVSLIRNNRGGPITVHRKALLESLAEELPRHSIRFSSKPISIEAQAQEGPYTIRLEDGTVITTKVLIGCDGVNSFVARKLGLTEPVNSGRSSVVALAVFPEGHGVREHVLQFLDVGKRAGIVPLNDKDIYWFLTFNTPKGETMTKDPQEIQKQVIENYAKDLPPIYAEVVRHCDLSTLTLAPLRLRLPWDLIFGNVSKGNMTVVGDAMHPMTPDLGQGGCAALEDAVVLGRHIGKSFIDNGRLVPGAVAEAIEGYVKERRWRAAWLIAGSYFSGWAQVGREGWLMKMFRDMIFYRFVLKRLIGIADYDCGKLPLLDDQNKTH* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1400 429 SUPERFAMILY FAD/NAD(P)-binding domain 27 402 IPR036188 -
Vvi4g1400 429 Pfam FAD binding domain 27 370 IPR002938 GO:0071949
Vvi4g1400 429 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 26 419 IPR044560 -
Vvi4g1400 429 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 336 - -
Vvi4g1400 429 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 169 184 - -
Vvi4g1400 429 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 305 320 - -
Vvi4g1400 429 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 27 49 - -
Vvi4g1400 429 Gene3D - 26 398 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1400 Vvi-Chr4 20906331 20914980 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1400 27 419 Miscellaneous Gene Families AT4G38540 39.655 1.91e-93 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1400 - - vvi:100257537 769.615