Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1396 ATGGGTGCATACCATCAGGTTGCTTTTTGCTTAGCTCTGCTTCTTTTCATGCACCAAGCCAGGGCCTGGCCTCTTGATCCTACTCACGGCTTTGTGGAAGTCCCTCTGAACACATCCAACTTTGAATTCCATAAGCCTTACGACTTGGCAGTAAGCCAAAGGTACAGCTTTGTAGATGGAGTCCACAAGCTCTGGGTCTTCTCTGATGACAAACCTCTGTCCCTAAACAGCCCCACCAAGCCTCGTAGCGAGATCCGCATCCGCGGATATGATTATTCTTCGGGTGTATGGCAATTTGAAGCATACGGGTACGTCCCATGCGGGACATCGGGTGTGTGTACCATGCAGGTTTTCGGGGCAAGCCCACCTCATGCAACGACCCTGATGCTCAGAGTCTACAATGGCACACTCTCCTACTACAGAGCTCCGGCACTGGTCGATGACATTTATGACAGGTGGTTCAGGCTAAATGTGATCCATGACGTGGATGCTGCAATTGTGAAGGTTTACATTGATGGGGTTCTCAAGTTTGAGGCACCGGGCCGTGGCGGCACCTCTCATTACTTCAAGTGCGGGGTGTATGCCCAGAACGACGACTCTCACAGCATGGAGTCTCGTTGGAAGGAAATCAAAGTTCTTAAAAAGTGCGTTTGA 654 0.5061 MGAYHQVAFCLALLLFMHQARAWPLDPTHGFVEVPLNTSNFEFHKPYDLAVSQRYSFVDGVHKLWVFSDDKPLSLNSPTKPRSEIRIRGYDYSSGVWQFEAYGYVPCGTSGVCTMQVFGASPPHATTLMLRVYNGTLSYYRAPALVDDIYDRWFRLNVIHDVDAAIVKVYIDGVLKFEAPGRGGTSHYFKCGVYAQNDDSHSMESRWKEIKVLKKCV* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1396 217 PANTHER BINDING PROTEIN, PUTATIVE, EXPRESSED-RELATED 14 215 - -
Vvi4g1396 217 SUPERFAMILY Concanavalin A-like lectins/glucanases 69 204 IPR013320 -
Vvi4g1396 217 Pfam Alginate lyase 40 212 IPR014895 -
Vvi4g1396 217 Gene3D - 53 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1396 Vvi-Chr4 20885557 20886362 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1396 - - vvi:100242151 461.07