Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1394 ATGAGGAGCATCAAACCCTTGCCTGAGGCTGTTCACAGCTCAGTTCGGTCTGGAATAATCTTGTTTGACTTGACTAGGGTTGTGGAAGAGCTGATATATAACAGTCTTGATGCTGGTGCAACAAAGGTGTCTGTTTCTGTAAGCGTTGGGACCTGTTATATTAAAGTAGTCGATGATGGCACTGGTGTTACTCGGGATGGATTGGTATTGTTGGGAGAAAGATATGCAACATCAAAGCTTCATCATTTGACTGAAATGGATGCTGCTACTGGTAGCTTTGGTTTTCGGGGTGAAGCATTGGGCTCCATTTCTGATGTTTCATTGTTAGAAATAGTGACAAAAACTCAAGGAAGACCAAATGGATATCGCAAAGTCATGAAGGGCTGCAAATGTTTGTATCTTGGAATTGATGATGATAGGCAAGATGTAGGCACAACAGTTGTTGTCCGTGATTTATTTTACAACCAACCAGTTCGGAGGAAGTATTTGCAATCTAGCCCCAAGAAGGTCTTGCACTCGGTCAAGAAATGCGTATTTCGAATTGCCCTAGTTCACTCAAATGTTTCTTTCAAAGTTGTTGATATTGAAAGCGATGATGAGCTTCTCTGCACAAAATCGTCCTCTTCTCCTTTGTCACTGCTAATTAGTGGTTTGGGGATTGAGGATTCTAGCTCCCTTCATGAATTGAACATAACTGATGGTATATTAAAGCTTTCTGGATATGTTTCTGGTCCTTGCAATACTTTCTCCATTAAGTCTTTTGATCCATGGAAGGCTAGCAGTGGCTCTCAAGACAAGAAAAGAAGTAGGTGTCAAGGATATCCAACATATATTTTGAACTTAAGGTGCCCTCAATCTCACTATGATTTAACTTTTGAACCATCGAGGACTGCTGTTGAGTTCAAGGACTGGGTTCCCATACTTGCCTTTCTTGAAAAAGCTGTTACACGCTTTTGGAGTGAACATATTGCACATGGAGAATCCTCTGTGCATGCAAATAAAACATCAGGACAAGAACTGTGGAAGGAACATGGCAATGTTGTATCAGCTGAAGAAGATTTGTCAGAAGTTGCAAAAAGGCAGTGCAGGATTCAAAATTGTCTTCTGGGCTGCCTCTCTTCCCCTATGGAGTTGCTAACTGAAGAGAATGACCATTTCTCTTGTAGAAAAGAAAATAAAATTCCATTTCAGAAGTTACGCAATGATACCTCAGAATTTGAAGGGCAACGGAATAAGATTGGATTTGTTCATCAAATTGACTCTTCATTCCAATCACTGGATGATTCTCCTTCCAAATGCATATCTGGTGTGCATCCACATACTGAGCACCTAGAGTTGCCTGATGACAACTTTTTCATTACAAAAAACAACTTCCTGGAGAATAAATTCACAGTTCTAGAAAGTTCTTTTGATCATGTAGAGGACAAGATTTTGGGTTCAACATGGGGGAATGAGTCCCTTAATGTTGATCATGATATGGGCAATGGATTTAGTGCACTATCTTATAACAGTTATGAATTCAGGAATGGTGTTGAGGAGGCCAGCAAGGATTTCAAGAAACCTATTCTGCAGAGTTGCTCCTTGGGGAGAAGCTTGCTATCTGATTGGGAGAGTGATAAATTTGAATTTCAAATTGATGGCTTGAGGACTAGGCAAAGGCAGATTGACCATAATAAGAGCTTTGATTTTTTTCCAGGTACTGCATGGCAGGAAGAGGCATCAAGTGATTGGCCCTCTTCCAGACTCAAAACAAAACCTGAAATGTGTACAGGTTTAGATTTTATGTCCAGAGATTCTTTAAAGTCACTCTCAACTTATAGAGAACGTTTTGCAGTGGAGAACAACTTGCCACCTGATTCAGTTGAACAAAGTGGAAAATTTGGCTCAGGCCATCTGTCTTTGAACTCTGAATGCTGTTCTATGGTATCACAAAGCTTATTTCAGACCACACCTTGGGATGTTGAACATTTCACCCATGAAAATACTCCTCAAGGGGGCCTTGGATCTGATAGGAATGTTAGTTATGAACATTTTATAGATAGTGAAAGTGGGGGATGGATTTTCAGTCATGATATTATGCCAAGTAGCTCCAGCCAAGAAAACTGCTCATCCTCAAGTTGTATAAACACTGGATTAGGTCTTAAGGACTACACTGTTCCAAGTAGAGATATCTACAGACTTCTTAAAGAGAACAATCTGGATAATATCTTTACTCCAAGACATTCTGATATACTAAGTATTGAAACAGATTGGTTATACTCAAAATCATGTGGTAAAGATAACAACAATAATCGTGCAGTGCCATCATGCAGCATTCCTTTATCTACCAATATTCACAAGGACGAAAACAAAAAAGAGAGGCTCAGATACCAAAATTGTGGACAAATTCATGCTTCAAAAGAAAGATCAAGAAGTCATTCAGCTCCACCAATTTACAGAGGCAAGAGAAAGTTCTTGGCCTTAAATGATCATTGGACAATGGAATCAAAAAAAGTAGATGTCATTGATAGCCATGATGCCCCCACTTTTCCAGAAACTGATGAATTGAAGCATCCTCTACAATCTTCTGGTGCATGTAATCAGTATTTTAAGCCAAGCTTTTTGGAAGACCCATTGTTCTATGGCAGATCTGATATGAAGAAAATGCTGGAAAATGAACCAGATATGGATAAGATTCAAAATATTGACATTTTTAGGAAGTCTCAATGTCTCCCTATTGATGATGATTCTTATTCTTTCAAAGACTTTACCACAAAGGAAGCTACAGATTTGATGAACTCTGAGAGCAAGTGGAGGAATAACTGTCCAAAAATTGCAAGTGGAGATAAATCGCAGAAGTTTAATGATCAATACAATGTACTTGACATCTCTTCGGGGATCTTGCACCTTGCTGGCGATTCATTAATTCCACAATCCATAACTAAGAATTGCCTTCAGGATGCCAAAGTTCTCCAACAGGTGGACAAGAAATTTATCCCAGTTGTGGCTGATGGAACGCTTGCTATTATTGACCAGCATGCTGCGGATGAAAGAATTCGACTGGAAGAACTCCGCCAGAAAGTGTTATCTGGAGAAGTGAAGACAATTACATATCTGGATGCTGAGCAAGAGTTGGTACTGCCAGAGATTGGCTATCAGTTACTGCACACTTATGCTGAACAGATACAGAATTGGGGTTGGATCTGCAACATACATGCTCAGAATTCAAGGAATTTGGATCTTCTTCACAAAAAGCCAACTGTTATCACACTTCTTGCGGTACCCTGTATTTTAGGTGTCAACTTATCAGATGTAGATCTTTTAGAATTTCTTCAGCAGCTTGCTGATACAGATGGATCATCAACAATGCCGCCATCTGTTCTCCGGGTCCTTAATCTCAAAGCATGCCGAGGGGCTATCATGTTTGGGGACGCTTTGCTACCTTCAGAATGTTCCCTTATTGTTGAAGAGCTAAAGCGGACCTCCTTGTGTTTCCAGTGTGCTCATGGACGACCAACAACTGTTCCCCTTGTCAACTTGGAGGCCTTGCATAAACAGATAGCAAAGCTTGGGTCGGGGGGTGGTGGTTCAATTGAGTTGTGGCATGGATTACGACGACATGAACTTAGTCTTGAACGTGCTGCACATCGTTTGAACTCATCTATGGGTTAA 3651 0.4032 MRSIKPLPEAVHSSVRSGIILFDLTRVVEELIYNSLDAGATKVSVSVSVGTCYIKVVDDGTGVTRDGLVLLGERYATSKLHHLTEMDAATGSFGFRGEALGSISDVSLLEIVTKTQGRPNGYRKVMKGCKCLYLGIDDDRQDVGTTVVVRDLFYNQPVRRKYLQSSPKKVLHSVKKCVFRIALVHSNVSFKVVDIESDDELLCTKSSSSPLSLLISGLGIEDSSSLHELNITDGILKLSGYVSGPCNTFSIKSFDPWKASSGSQDKKRSRCQGYPTYILNLRCPQSHYDLTFEPSRTAVEFKDWVPILAFLEKAVTRFWSEHIAHGESSVHANKTSGQELWKEHGNVVSAEEDLSEVAKRQCRIQNCLLGCLSSPMELLTEENDHFSCRKENKIPFQKLRNDTSEFEGQRNKIGFVHQIDSSFQSLDDSPSKCISGVHPHTEHLELPDDNFFITKNNFLENKFTVLESSFDHVEDKILGSTWGNESLNVDHDMGNGFSALSYNSYEFRNGVEEASKDFKKPILQSCSLGRSLLSDWESDKFEFQIDGLRTRQRQIDHNKSFDFFPGTAWQEEASSDWPSSRLKTKPEMCTGLDFMSRDSLKSLSTYRERFAVENNLPPDSVEQSGKFGSGHLSLNSECCSMVSQSLFQTTPWDVEHFTHENTPQGGLGSDRNVSYEHFIDSESGGWIFSHDIMPSSSSQENCSSSSCINTGLGLKDYTVPSRDIYRLLKENNLDNIFTPRHSDILSIETDWLYSKSCGKDNNNNRAVPSCSIPLSTNIHKDENKKERLRYQNCGQIHASKERSRSHSAPPIYRGKRKFLALNDHWTMESKKVDVIDSHDAPTFPETDELKHPLQSSGACNQYFKPSFLEDPLFYGRSDMKKMLENEPDMDKIQNIDIFRKSQCLPIDDDSYSFKDFTTKEATDLMNSESKWRNNCPKIASGDKSQKFNDQYNVLDISSGILHLAGDSLIPQSITKNCLQDAKVLQQVDKKFIPVVADGTLAIIDQHAADERIRLEELRQKVLSGEVKTITYLDAEQELVLPEIGYQLLHTYAEQIQNWGWICNIHAQNSRNLDLLHKKPTVITLLAVPCILGVNLSDVDLLEFLQQLADTDGSSTMPPSVLRVLNLKACRGAIMFGDALLPSECSLIVEELKRTSLCFQCAHGRPTTVPLVNLEALHKQIAKLGSGGGGSIELWHGLRRHELSLERAAHRLNSSMG* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1394 1216 SMART MutL_C_2 983 1139 IPR014790 GO:0005524|GO:0006298
Vvi4g1394 1216 SUPERFAMILY DNA mismatch repair protein MutL 981 1170 IPR037198 -
Vvi4g1394 1216 Gene3D - 251 324 IPR014721 -
Vvi4g1394 1216 CDD HATPase_MutL-MLH-PMS-like 16 202 - -
Vvi4g1394 1216 Pfam MutL C terminal dimerisation domain 982 1139 IPR014790 GO:0005524|GO:0006298
Vvi4g1394 1216 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Vvi4g1394 1216 SUPERFAMILY Ribosomal protein S5 domain 2-like 198 320 IPR020568 -
Vvi4g1394 1216 Gene3D - 1026 1134 IPR042121 -
Vvi4g1394 1216 Gene3D - 986 1170 IPR042120 -
Vvi4g1394 1216 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22 198 IPR036890 -
Vvi4g1394 1216 FunFam MUTL protein homolog 3 1027 1134 - -
Vvi4g1394 1216 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 120 - -
Vvi4g1394 1216 SMART DNA_mis_repair_2 214 320 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vvi4g1394 1216 FunFam DNA mismatch repair endonuclease MutL 1 213 - -
Vvi4g1394 1216 Gene3D - 2 208 IPR036890 -
Vvi4g1394 1216 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1175 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1394 Vvi-Chr4 20870430 20881039 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1394 K08739 - vvi:100253902 2414.8