Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1390 ATGTTCGTCAAGAAGCTTGTTGAGAAGGCTTCCAAGAAGCCTGGAGGAAGTTTGGATGGTTTGAAATCTCAAGATGTAGACCCACGCCTGGTTTTCCATTATGGAATTCCAGGGGGTTCTATCTTATTTGCTTATGATTCGATTCAGAAGATACTTGCAATTGCTACAAGAGATGGTCGAATTAAATTATTTGGCAAAGACAACACTCAAGCTCTACTTGAATCCAATGAGACAGTTCCAAGCAAGTTTTTACAGTTTATTGAGAACCAAGGCATTCTTCTAAATGTAACTGCTGAGAATCACATTGAGGTCTGGGACATAGACAAGAAGCTGTTGTCTCATGTGCATGTTTTTAAAGAAGAAATTACCTCTTTTATGGTCATGCAACGAAGTTTCTTCATGTATCTTGGAGACTCTTCTGGTAATATTTCTGTTTTGAAGCTTGAACAAGAACCATGTCATATGGTGCAAATGAAATACACTATACCTTCAACAGCCTCTCATGGGAATCCAACTGAAGTTGCAGGTGGCACTGCTGTAATGCATATTCTGCCCCAACCAACTGCTGAAAGTAAAAGGGTTCTTATAATATTTAGAGATGGTCTGATTGTGTTATGGGATATACGAGAAAGCAAGGTTATTTTCAAGACTGGTGTAAATATGTTGCAACCATTAAGTCATGACACAAAGACAGTAACTTCTGCATGCTGGGCGTGTCCTTTTGGAGGTAAAGTTGTGGTTGGGTACAGCAATGGAGATGTTTTCATATGGAATGTTCTTCATATTCCAGATCCAAGTAATGGAGCAGCAGCAGATAAAGATTTATATTCTTCTCAAAGTGCTCCTATTTACAAACTCAATCTTGGATATAAGTTGGAAAAAATTCCTATAGCATCATTAAAATGGGCCTATGCAGATGGGAAGGCAACTCGACTATATGTTATGGGTGGCTCTGACATTCAATCCACAAACTTATTGCAGGTGATCTTATTGAATGAGCAGACTGAATCACGCACAATTAAATTGGGGATTCATCTGCCTGAGCCTTGTGTTGACATGGTGATCGTTTCAAGCTCCAGTGAGCAAAGCAAGCATAAACAAGATTCTTTCCTTCTTCTGGGAAAATCTGGTTGCATGTATGCCTACGATGATTATGTGATAGAAAAGTATCTCTTACAATGCCAATCAAGGTCCTCACCCTCCCTCCCAAAGGAGATAATGGTAAAGCTGCCTTTTTCTGATTCAAGCATCACTATAGCAAAATTCATCACAGAGAATCCAAATTTCTTAAATTCTTCTGATGAGGATTATGTTTCGCTGGCAAAAAGCATTCCACCATTTCTTCCATCTGAAGCAAAACCAAAAGATGAAACACGGTTGAACTCTACCAACTTTGGTGGATTTGCAAAGATTAAAAACTTGTACATTACAGGACACAGTAATGGAGCCATATATTTTTGGGATTTATCGTGTCCATTTTTGCTCCCAATCTTATCATTAAAACAACAGAGCGAGGATGACTTATCTTTAAGTGGTATAGCATTAACTGCATTGTATTTTGACGGCCATTCTCGCTATCTTATTTCTGGTGACCAAAATGGAATGGTTCGCATCTTCAAATTCAAAACTGAGGCGTATGCCACAGCCACCAGTTTTATGCCTCTGCAAGGAAGTACAAAGAAAGGAAGCAACCATATCATCCAGAGTGTCAAACTTATAAAGGTCAATGGTTCTGTGCTTTCTATAGACATAAGCCGTGGCTCAAGACATCTTGCAATTGGATCTGATCAAGGATATGTTTCACTAATTGATATGGAAAGTCCCTCTCTATTGTATCAAAAACTTATCGAAAGTGAATTGAGCACTGGTGTCATCTCCGTGTGGTTTGAAACCTGCATTCTGCATGGTTTTGAGAAGAATATTTTAGCGGTAGCAACAAAGGATTCATCAATTTTGGCTCTTGATAGTGACACTGGAAACACACTTAGTACCAGCATGATCCATCCCAAGAAACCCTCTAAAGCTCTATTCATGCAGATTTTGGATGGGCATGATGCATTTGGTAAAAGATCATATACATCAGAGAATTTGGACTTGAACAAAGGGAACTATATTGAGGATTCAAAGCAGTTGTCACTATTGCTATGTTCTGAGAAAGCTGCATATGTCTATTCCTTAACACATGTAATTCAGGGAATTAAGAAGGTACACTACAAGAAGAAGTTCAATTCCTCTTGTTGCTGCTGGGCATCAACATTCTACACTCCCTCTGATGCTGGGCTTGTACTCATTTTTACTAATGGAAAAATTGAAATAAGGTCCCTTCCAGAGTTATCCCTGTTAAAGGAAACTTCAATAAAAGGTCTTGCATTTTCAACTTCCAAATCAAACTCATTGTCAAACAGTTCAGTATGCTCTTCAAGGGATGGAGAAATTATTGTGGTGAATGGTGACCAGGAAATGTTTGCTCTCTCAAGTTTGCTTCAAAATGAAATTTATAGGCCTTTGGACTCAGCTCGCCAAGTCTACAGGAAAGATCTGGTGGTTTCACAAGAAGGGCTTATTTCTGGACCCCTTGTCCATAAGGAAAAGAAAAAGGGCATATTTAGCTCTGTTATTAAAGGCAGCAAAACAAAGCATGTGCCTGATATGGAAGCAGAAGATGCGAAAGAAAGTATTGAAGAACTTTCATCAATCTTTTCAGTTGCCAACTTCCCATTATATGCTGGGAAAGGAGACAATCTAGACATGGATGAAGAGGAGGTTGAATTAGATATAGATGATATTGACCTTGAAGATCCTGGCGAAAAGCCCAAGGGACAGAATATGATGGCAGCCCTAAATAAGCAGAAGCTCACAAGCAAATTTCAGGCTCTTAAAGGTAAATTAAAACATGTGAAGTTAAAAAATGAAAAAAGTTCCACGAAGGAAGAGCCACAAGATGAGAAGGCTGGTGCAGTTGATCAGATCAAGAAGAAATATGGGTTTCCTATATCTGGTGAATCAAGTGTCATTAAAATGGCAGAAAGCAAGCTGAACGAGAATTTGAAGAAGTTGCAGGGTATCAACATAAAAACGACAGAGATGCAGGACACGGCTAAATCATTTTCATTCATGGCAAAGCAGGTCCTGCGAGCTGAGCAAGATAAGCAAAGCTCATAA 3162 0.3899 MFVKKLVEKASKKPGGSLDGLKSQDVDPRLVFHYGIPGGSILFAYDSIQKILAIATRDGRIKLFGKDNTQALLESNETVPSKFLQFIENQGILLNVTAENHIEVWDIDKKLLSHVHVFKEEITSFMVMQRSFFMYLGDSSGNISVLKLEQEPCHMVQMKYTIPSTASHGNPTEVAGGTAVMHILPQPTAESKRVLIIFRDGLIVLWDIRESKVIFKTGVNMLQPLSHDTKTVTSACWACPFGGKVVVGYSNGDVFIWNVLHIPDPSNGAAADKDLYSSQSAPIYKLNLGYKLEKIPIASLKWAYADGKATRLYVMGGSDIQSTNLLQVILLNEQTESRTIKLGIHLPEPCVDMVIVSSSSEQSKHKQDSFLLLGKSGCMYAYDDYVIEKYLLQCQSRSSPSLPKEIMVKLPFSDSSITIAKFITENPNFLNSSDEDYVSLAKSIPPFLPSEAKPKDETRLNSTNFGGFAKIKNLYITGHSNGAIYFWDLSCPFLLPILSLKQQSEDDLSLSGIALTALYFDGHSRYLISGDQNGMVRIFKFKTEAYATATSFMPLQGSTKKGSNHIIQSVKLIKVNGSVLSIDISRGSRHLAIGSDQGYVSLIDMESPSLLYQKLIESELSTGVISVWFETCILHGFEKNILAVATKDSSILALDSDTGNTLSTSMIHPKKPSKALFMQILDGHDAFGKRSYTSENLDLNKGNYIEDSKQLSLLLCSEKAAYVYSLTHVIQGIKKVHYKKKFNSSCCCWASTFYTPSDAGLVLIFTNGKIEIRSLPELSLLKETSIKGLAFSTSKSNSLSNSSVCSSRDGEIIVVNGDQEMFALSSLLQNEIYRPLDSARQVYRKDLVVSQEGLISGPLVHKEKKKGIFSSVIKGSKTKHVPDMEAEDAKESIEELSSIFSVANFPLYAGKGDNLDMDEEEVELDIDDIDLEDPGEKPKGQNMMAALNKQKLTSKFQALKGKLKHVKLKNEKSSTKEEPQDEKAGAVDQIKKKYGFPISGESSVIKMAESKLNENLKKLQGINIKTTEMQDTAKSFSFMAKQVLRAEQDKQSS* 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1390 1053 Gene3D - 40 319 IPR015943 GO:0005515
Vvi4g1390 1053 SUPERFAMILY WD40 repeat-like 44 613 IPR036322 GO:0005515
Vvi4g1390 1053 MobiDBLite consensus disorder prediction 968 989 - -
Vvi4g1390 1053 Pfam Lethal giant larvae(Lgl) like, C-terminal 729 832 IPR013905 -
Vvi4g1390 1053 SUPERFAMILY WD40 repeat-like 571 834 IPR036322 GO:0005515
Vvi4g1390 1053 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 9 1048 - -
Vvi4g1390 1053 Gene3D - 453 614 IPR015943 GO:0005515
Vvi4g1390 1053 Gene3D - 618 836 IPR015943 GO:0005515
Vvi4g1390 1053 CDD R-SNARE_STXBP5_6 989 1046 - -
Vvi4g1390 1053 FunFam Syntaxin-binding protein 5 isoform A 21 180 - -
Vvi4g1390 1053 SMART WD40_4 501 540 IPR001680 GO:0005515
Vvi4g1390 1053 SMART WD40_4 566 604 IPR001680 GO:0005515
Vvi4g1390 1053 SMART WD40_4 218 258 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1390 Vvi-Chr4 20808196 20822529 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1390 - - vvi:100262676 2028.06