Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1384 ATGTACGGATCGAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGATCGGCTCAAAGAGACAAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAGCAGCAGTGCAAGTGGTTTCCAACCTTATGGCTATGGAAGCGGCTTTCAGCCTCCCACCTTTCCAGTGGTTCGTCTCAGGGGCCTTCCTTTCAACTGCACCGATATTGACATTTTCAAGTTCTTTGCTGGGCTAGACATAGTGGATGTGTTGCTGGTGAACAAGAGTGGGCGCTTCTCAGGAGAGGCTTATGTTGTCTTTGCGGGATCCATGCAGGCTGACTTTGCTTTGCAGAGGGATAGACAGAACATGGGACGCAGATATGTTGAAGTTTTTAGGTGCAAGAAGCAGGATTATTACCATGCTGTGGCTTCAGAGGTGAATTATGAAGGAATATATGACAATGACTTCCATGGAAGTCCTCCTCCATCTAGGTCAAAGAGGTTCTCAGATAAGGACCAAATGGAGCACACTGAAATATTGAAGTTACGTGGTCTCCCCTTCTCTGTGAAGAAATCTCAAATTCTTGAATTTTTTGGAGACTTTGAGCTTGGAGATGATAAGGTACACATTGCATGTCGCCCAGATGGTAAGGCTACCGGAGAGGCTTATGTGGAGTTTGCTTCAGCAGAAGAGGCTAAGAAAGCTATGGGCAAGGACAAGATGACAATTGGATCACGGTATGTCGAGCTCTTCCCATCAACACCAGATGAGGCAAGACGAGCTGAGTCAAGATCAAGGCAATGA 795 0.473 MYGSRGAMLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPSTPDEARRAESRSRQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1384 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 59 128 - -
Vvi4g1384 264 SMART rrm1_1 176 248 IPR000504 GO:0003723
Vvi4g1384 264 SMART rrm1_1 59 128 IPR000504 GO:0003723
Vvi4g1384 264 SUPERFAMILY RNA-binding domain, RBD 48 137 IPR035979 GO:0003676
Vvi4g1384 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 245 IPR000504 GO:0003723
Vvi4g1384 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 123 IPR000504 GO:0003723
Vvi4g1384 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 176 248 - -
Vvi4g1384 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Vvi4g1384 264 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 54 256 - -
Vvi4g1384 264 Gene3D - 50 145 IPR012677 -
Vvi4g1384 264 Gene3D - 158 264 IPR012677 -
Vvi4g1384 264 SUPERFAMILY RNA-binding domain, RBD 169 258 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1384 Vvi-Chr4 20771278 20772991 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1384 K12898 - vvi:100247294 537.339