Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1383 ATGGACGAAACGCCGTCGTATCCTCCCATCGAGCCCACTGATTTCGATCTCATCGTCGTAGGAACCGGACTTCCCCAATCCGTCATCGCGGCCGCCGCTTCCTCTGCCGGTAAATCAGTCCTCCATCTTGACAGCAACTCATTCTATGGCAGCCACTTCTCCTCTCTCAATCTCGACGAGTTCTCATCGTTCCTCACTTCTCAATCCGCCGTACACTCCTCTCATCCCAACCCTCCATCTTCCGTCGCCGCAGATGCCGCCGAGTATGTCGCCCTGGATCTCAAGACACGTCCTATGTATTCTGACGTCGAAATCACTTCCCACAGTTCGGATCCTGTCGAGCATTCCAGAAAGTTCAACCTAGATGTGTCGGGACCTAGGGTATTGTTCTGCGCCGATGCAGCCGTCGACCTCATGTTGAAATCCGGCGCAAGCCAGTATTTAGAATTCAAGAGCATCGATGCGAGTTTTGTGTGCGATGCAGATGGCCGGTTCTCGACCGTGCCCGATTCAAGAGCTGCGATATTCAAAGATCGGAGTCTCTCGCTGACGGAGAAGAATCAGTTAATGAGGTTCTTCAAGCTTATTCAGGGACACTTAGCTGCTTCAGATGAGGCTGAGAATGATTCGAATGCGAGGATCTCGGAGGACGATTTAGAGAGTCCCTTTGTTGAGTTTTTGAACAAAATGCGGTTGCCGCCCAAGATTAAATCGATGATCCTATATGCAATAGCCATGGCCGATTATGATCAAGACAGCATAGAGGTCTGTAAAGATGTACTCGACACAAAAATTGGCATTGATCGTTTGGCTCTTTACCACTCATCAGTTGGCAGGTTTCCAAATGCACTTGGGGCTCTAATATATCCTATTTATGGCCAAGGGGAACTTACACAAGCCTTTTGTCGCCGTGCTGCTGTTAAGGGTTGCATATATGTTTTGCGAATGCCAGTGATTGCTCTGCTTATGGAAAAGGAAAGCGGGCATTGTAAAGGTGTCAGACTGGCTTCTGGTCAGGATATATTCAGCCAAAAGTTATTGGTGGATCCATCCTTCATAGTACCAGTGCCGGTTGCTCCTTCTCAACCTGATTGTATGCCAGAAAGTTCTCAAGTTATCAATCTGGTAGATGCTAAACAGAAGGTGGCTAGGGGAATATGCATTATGAAGAGTTCCTTAAAGCCAGATGTGTCGAACTTTGTGTTTGTGTATCCTCCTAGATCTTTGTACCCTGAGCAGGCCATGGCAATCCGAGCTGTCCAGATAGGTAGTAATTTAGGTGTTTGTCCGTCAGGCATGTTTGTGTTGTATCTTTCTACACTGTGTAATGATGCCACTCAGGGGAAGGAGTTACTGCAGGCAGCCATAAAGTCTCTTTTCACGCTGCCAGTTTCTGGAAATCCTGAAAATAGTTCTTCAGTTCACAGTGAGAACATGGAAGAAGTGAAACCCACATTACTTTGGAGTGCCTTGTATACTCAGGAGCTGGTTATGGGTTCATTTGAATCTATCAGCTCCACCTCCATGCCAGATGGGAATCTGAATTACAATGTTCTTTTAGATGCAACGGTAAAGCTATTTCACCAGATGTATCCCCAGGAAGAATTCTTTCCAGAGACAACCTCACCTGAGAATGTTGAGGATGATGACGGTCTTAGTCTAGAGTCCTAG 1671 0.4704 MDETPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSSFLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPVEHSRKFNLDVSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLSLTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSMILYAIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGALIYPIYGQGELTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPVPVAPSQPDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMAIRAVQIGSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGNPENSSSVHSENMEEVKPTLLWSALYTQELVMGSFESISSTSMPDGNLNYNVLLDATVKLFHQMYPQEEFFPETTSPENVEDDDGLSLES* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1383 556 Pfam GDP dissociation inhibitor 99 451 IPR018203 GO:0005092|GO:0007264
Vvi4g1383 556 Pfam GDP dissociation inhibitor 14 61 IPR018203 GO:0005092|GO:0007264
Vvi4g1383 556 SUPERFAMILY FAD/NAD(P)-binding domain 12 355 IPR036188 -
Vvi4g1383 556 SUPERFAMILY FAD-linked reductases, C-terminal domain 380 495 - -
Vvi4g1383 556 PANTHER RAB GDP-DISSOCIATION INHIBITOR 11 540 IPR018203 GO:0005092|GO:0007264
Vvi4g1383 556 Gene3D - 12 536 IPR036188 -
Vvi4g1383 556 PIRSF Rab_ger_ger_transf_A_euk 1 111 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vvi4g1383 556 PIRSF Rab_ger_ger_transf_A_euk 101 554 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vvi4g1383 556 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 168 286 - -
Vvi4g1383 556 MobiDBLite consensus disorder prediction 537 556 - -
Vvi4g1383 556 PRINTS Rab GDI/REP protein family signature 293 314 IPR018203 GO:0005092|GO:0007264
Vvi4g1383 556 PRINTS Rab GDI/REP protein family signature 135 151 IPR018203 GO:0005092|GO:0007264
Vvi4g1383 556 PRINTS Rab GDI/REP protein family signature 185 200 IPR018203 GO:0005092|GO:0007264
Vvi4g1383 556 PRINTS Rab GDI/REP protein family signature 16 34 IPR018203 GO:0005092|GO:0007264
Vvi4g1383 556 PRINTS Rab GDI/REP protein family signature 34 51 IPR018203 GO:0005092|GO:0007264
Vvi4g1383 556 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 92 496 - -
Vvi4g1383 556 MobiDBLite consensus disorder prediction 541 556 - -
Vvi4g1383 556 FunFam Rab proteins geranylgeranyltransferase component 168 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1383 Vvi-Chr4 20752682 20765631 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1383 K23460 - vvi:100262556 1087.4