Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1382 ATGAGACCGCTCCGGCGATCGATGGTCGGATTCTTGAACCGGGCTCTTCACAGTGATGCTGACACCACATTTGTCGAATCTTTTTCGTTGTTACTACGAAAACATTCAAAATCCAAATCGATTAGAGAGTGTAAACAAATCCACGCAAAGCTGTTGATCTCAGAAGCAATCTCGGAAATCTACGTGGCAAATACTGTGTTGAGTTTCTACTCAAAGTATGGTGATTTTTATAATGCACGCCTTATGTTCGATCAAATGTCTCACAAGAATGTTGTTACATGGACGTCCATGATTTCAGCTCTCGTTCATCATGGGTTCTACCTTAAAGCACTCAATCTGTTCAAAGAAATGCTTGAATCTGGTGCTAGACCGAACCAGTTCACTTTTTCGGTTGTGGTTCGGGCCTGTATAGGTACTGCGTCTCTTGATTTGGGTTTACAAGTTCATGGGTTGATCATTCGTTTGGGGCTTGAGACAGATGAATTTGCAGGGAGTTCACTTGTGGATATGTACTTCAAAATTGGGGGTAGCCTTGAGGATGCATGTTGTGTTTTTAGTAGGTTGTTTAGGAGGGACTCTGTTATATGGAATGTTATGATTTCTGGGTTTTCTCAGATTGGTGATGTTAGTGAAGTTTTTCGATTGCTTTCGGAGATGTGGGTGCTTGATGGGTTGAAACCCAATGATTTCACGCTTACAAGTTTGCTCAAGTGTTGTTGTTTGCTGGGAGAGGTTCAGCAAATTCATGGGCTTGCCTTAAAACTTGGAACCGAAGTTGATGTAGTGGTGGGCAGTGCTTTAGTAGATGCATATGGAAAGTGTGGGAATATGGAGTGGGGTCGAAAAGTTCTGAATTCAATGGAGTGGAAAGATAGTTTTGTTTGGAGCTCAATCATCTCTGGTTATGCAAGGAATGGCAGTGGAGACGAAGCTGTTTGTTTGTTTAGGGATATGTGTAGACAAGGCATGAAACCTGACCAACATGCATTGTCAAGTACCCTGAAAGCTTGTGCTGAGATTGAAGACTTAGAAACAGGAGTTCAAGTTCATAGTCAGATGATAAAAAATGGCTACCACAGTGATTGCTTTGTAGCAAGTGCTCTAATTACTCTTTATTCAGATTGCAATGAAATTTGTGAAGCACATAAGTTGTTCAGAAGGATTGATGATAAAGATATTGTGGCTTGGAATTCAATGATCCTGGGTTATGCTCAAATGGAGGAGGAATCTTCTTACCACTGCATCAAAATTTTCCGAGAACTTTGTCAAACCCCTGCATTGAAACCAGATGGAGCCACTATAATTGCCATTCTAAAATCATGTCAGAATCAAGCAGGTCTAATAACAGGCATTCAGATTCATACAATGATAATGAAATCAAGCCTAAGTTGTGAAACTCTTATTTGTAATGCTGTAATCAACATGTATTCCAAATGTGGGGATGTTGATGATGCATATAAAGCTTTCATTGACATAGTTCATAGAGATGCAATTTCATGGAGTTCTATAATTGGAAGTTATCAACAGAATGGTTTTGAACTGGAAGCTCTGAGCCTTTGCAAGGAGATGTTAGCAGATGGGGTCTATGTAACCAGTTTTAGCCTTCCATTGTGCATTGCAGCTTGCTCAGAACTTGCAGCTATAGATGTGGGTAAACAGTTCCATTCTTCTGTTATCAAGCTTGGTTTTGATGGAGATGTCTATGTAGGGAGCTCTATCATAGATATGTATGCGAAATGTGGATTCATGGAAGAATCCCAGAAAGCCTTCGATGAACAAGAAGACCCAAATAAAGCAACGTTCAATGCACTGATATCTGGATTTGCACATCATGGAAAAGCTCTCGAGGCAATAGAATTATTCAAAGAAATGGAAAAGATGAGCTTAGTTCCCAACCAAATCTCTTTCTTAGCTGCTCTATCAGCCTGTAGCCATGCAGGTTTGGTGGAAGAGAGTTTATTTTTCTTTGACTTGATGCATAAAAAATATAACATTAAGCCAGAATCTGAGCATTATTCGTGCCTGGTTGATGTATTGGGCCGTGCTGGAAGGCTTGAGGAAGCATACCAAATCATACAGAATGATGGAAAAGAGCAGGCATGGAGAACATTACTAAGTGCCTGTAGGAATTATGGGAATGCAGAAATTGCAGAAAAATCTGCAAGGAAGCTAATGGAACTGGATCCTAATGATCATGCGTCATATGTTCTTCTCTCCAACCTCTACTCAGGAGAGGGAAAATGGGAACAAGCTTTTAAGCTGAGGCAGAGAATGGTGGAGATTGGAGTGAAGAAAGATCCAGGAAGCAGCTGGTTGATATTCAGAGAGCAGGTTCATCAATTCTCGGTGGGTGATTTTTCACACCATGATATGAGGGAGATTTTAGGTGAATTGAACATATTGAATAAACACATCAATAGTGCTGGTTCTTGGCATGTTAGTGTTGATTGTTAA 2454 0.4038 MRPLRRSMVGFLNRALHSDADTTFVESFSLLLRKHSKSKSIRECKQIHAKLLISEAISEIYVANTVLSFYSKYGDFYNARLMFDQMSHKNVVTWTSMISALVHHGFYLKALNLFKEMLESGARPNQFTFSVVVRACIGTASLDLGLQVHGLIIRLGLETDEFAGSSLVDMYFKIGGSLEDACCVFSRLFRRDSVIWNVMISGFSQIGDVSEVFRLLSEMWVLDGLKPNDFTLTSLLKCCCLLGEVQQIHGLALKLGTEVDVVVGSALVDAYGKCGNMEWGRKVLNSMEWKDSFVWSSIISGYARNGSGDEAVCLFRDMCRQGMKPDQHALSSTLKACAEIEDLETGVQVHSQMIKNGYHSDCFVASALITLYSDCNEICEAHKLFRRIDDKDIVAWNSMILGYAQMEEESSYHCIKIFRELCQTPALKPDGATIIAILKSCQNQAGLITGIQIHTMIMKSSLSCETLICNAVINMYSKCGDVDDAYKAFIDIVHRDAISWSSIIGSYQQNGFELEALSLCKEMLADGVYVTSFSLPLCIAACSELAAIDVGKQFHSSVIKLGFDGDVYVGSSIIDMYAKCGFMEESQKAFDEQEDPNKATFNALISGFAHHGKALEAIELFKEMEKMSLVPNQISFLAALSACSHAGLVEESLFFFDLMHKKYNIKPESEHYSCLVDVLGRAGRLEEAYQIIQNDGKEQAWRTLLSACRNYGNAEIAEKSARKLMELDPNDHASYVLLSNLYSGEGKWEQAFKLRQRMVEIGVKKDPGSSWLIFREQVHQFSVGDFSHHDMREILGELNILNKHINSAGSWHVSVDC* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1382 817 FunFam Pentatricopeptide repeat-containing protein At3g13880 246 345 - -
Vvi4g1382 817 NCBIfam pentatricopeptide repeat 600 632 IPR002885 -
Vvi4g1382 817 NCBIfam pentatricopeptide repeat 194 228 IPR002885 -
Vvi4g1382 817 NCBIfam pentatricopeptide repeat 294 326 IPR002885 -
Vvi4g1382 817 NCBIfam pentatricopeptide repeat 92 125 IPR002885 -
Vvi4g1382 817 Pfam PPR repeat 498 528 IPR002885 -
Vvi4g1382 817 Pfam PPR repeat 571 592 IPR002885 -
Vvi4g1382 817 Pfam PPR repeat 469 493 IPR002885 -
Vvi4g1382 817 Pfam PPR repeat 671 692 IPR002885 -
Vvi4g1382 817 Pfam PPR repeat family 596 643 IPR002885 -
Vvi4g1382 817 Pfam PPR repeat family 89 136 IPR002885 -
Vvi4g1382 817 Pfam PPR repeat family 290 338 IPR002885 -
Vvi4g1382 817 Pfam PPR repeat family 192 240 IPR002885 -
Vvi4g1382 817 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 318 809 IPR046960 GO:0003723|GO:0009451
Vvi4g1382 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Vvi4g1382 817 FunFam Pentatricopeptide repeat-containing protein At4g14850 44 144 - -
Vvi4g1382 817 FunFam Pentatricopeptide repeat-containing protein 571 807 - -
Vvi4g1382 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 227 IPR002885 -
Vvi4g1382 817 Gene3D Tetratricopeptide repeat domain 596 815 IPR011990 GO:0005515
Vvi4g1382 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Vvi4g1382 817 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 346 445 - -
Vvi4g1382 817 Gene3D Tetratricopeptide repeat domain 6 140 IPR011990 GO:0005515
Vvi4g1382 817 Gene3D Tetratricopeptide repeat domain 447 555 IPR011990 GO:0005515
Vvi4g1382 817 Gene3D Tetratricopeptide repeat domain 249 342 IPR011990 GO:0005515
Vvi4g1382 817 Gene3D Tetratricopeptide repeat domain 141 248 IPR011990 GO:0005515
Vvi4g1382 817 Gene3D Tetratricopeptide repeat domain 343 446 IPR011990 GO:0005515
Vvi4g1382 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 731 765 IPR002885 -
Vvi4g1382 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Vvi4g1382 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Vvi4g1382 817 Pfam E motif 711 772 IPR046848 -
Vvi4g1382 817 SUPERFAMILY TPR-like 69 761 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1382 Vvi-Chr4 20747921 20750374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1382 110 809 Glycoside Hydrolase AT3G49170 32.821 7.74e-129 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1382 - - vvi:104879191 1628.99