Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1378 ATGGTGAAGGCTGATTCTGAACAAAAGCTCTATACAAGGATGCGGCTTTGGGAATTTCCAGACCAGTACATTGTTGAGCCCACTAATGGCTCTTCTGGTTCCTGTTTGGCAATCAGTAGAGAGGATGGGTCAATGAAACTGATTGACGAGCTTCAGCAATCCAACTCTGTTCAGGTTCCTAAAATTAGGACAATTTTTGGTGTAATTGGGATGCTAAAGCTCTTGGCAGGATCATATTTATTAGTTATAACAGAACGTGAATGTGTTGGGTCTTACTTGGGGCATCCTATCTTCAAAGTTTCATCCCTGAAGGTTCTTCCATGTGATCATTCTCTCAAAAATTCCACTGCAGAACAGAAAAAGATGGAGGGTGAGTTTTCTGGCCTTATAAATGTAGCAGAGAGGGCTTCTGGTCTGTTTTTTTCGTATGACACAAATTTAACTCTGAGTGCACAACGATTGCATGATTTGGGTGATGAGTCCAAGCTACTTCCTCTTTGGAGACAGGCAGACCCTAGATTTCTCTGGAACAACTATATGTTGGAAGTTCTCATCGATAACAAGCTTGATCCATACTTGCTTCCTGTCATCCAAGGGAATATCCTTATCTCATACTTTCAAGCAGCCATTGGAAAAGATATTATTGATGTTACCTTGATTGCACGAAGATGCACTAGGAGAACTGGCACTCGGATGTGGAGGAGGGGAGCTGATTCTGATGGGTATGTTGCAAATTTTGTGGAAAGTGAGCAAATTGTACAGTTGAATGGATACACAGCATCATTCGTACAGGTTCGGGGGTCTATTCCATTACTTTGGGAGCAAATTGTTGATTTGACATATAAACCTAAGTTCGAGATTGTGAAACTTGACGAAGCACCTCGAGTAGCTGAACGACATTTTTTGGATTTAAGAAAAAAATATGGGAGTGTTTTAGCTGTTGATCTTGTCAATCAGCATGGAAGTGAAGGACGCTTAAGTGAAAAGTTCGCCAGTGCAATGCAGCATATTGTTAATGATGATGTAAGATATCTGCACTTTGATTTTCATCGAATTTGTGGGCATGTTCACTTTGAGCGCCTCTCCATCCTTTATGATCAGATTGTCGATTTCCTCACCAAAAACAGGTACCTTTTGTTGAATGAAAAAGGTGAGAAAGTTGAGGAACAACTCGGAGTTGTAAGGACCAACTGTATTGATTGCTTAGACCGTACAAATGTTACCCAGAGCATGATTGGTCGAAATATGTTGGAATGCCAACTTAGAAGACTTGGTGTTTTTGGTGGTGATGAAACTATTAGCTCACATCCAAATTTCGATGAGAACTTCAAAATTATGTGGGCTAATCATGGTGATGACATTAGTATCCAATACTCTGGTACTCCAGCTTTGAAGGGAGATTTTGTCAGGTGTGGCCAGCGGACAGTTCAAGGAATTCTTAAAGATGGTTGGAATGCCCTCATGCGTTATTACCTGAATAATTTTCGTGATGGGACAAAACAGGATGCCATTGATCTCCTGCAAGGGCATTACATTGTTTCTGTCAACCGGGATATGACCCCCCCATCTCAGAAAGGGGGCCTTGAAGCTATTGCTTCAATTCGGCTGGCACTATCACTGGTCTTCACTGGCTTCTTTTTTGCGACCATGTCACTGAGGCAAGTTGGAACTGATGTACGCCACCTATTATTTGCGGTTATGTGGGCGGCCCTGAGTTTAGTGATAGCAACATTTGTAAGGGCAAATGGCCGGATTTTCTGCAATCGGCCTCGTCTGCACCAGCCTCGCCGTTGA 1794 0.4236 MVKADSEQKLYTRMRLWEFPDQYIVEPTNGSSGSCLAISREDGSMKLIDELQQSNSVQVPKIRTIFGVIGMLKLLAGSYLLVITERECVGSYLGHPIFKVSSLKVLPCDHSLKNSTAEQKKMEGEFSGLINVAERASGLFFSYDTNLTLSAQRLHDLGDESKLLPLWRQADPRFLWNNYMLEVLIDNKLDPYLLPVIQGNILISYFQAAIGKDIIDVTLIARRCTRRTGTRMWRRGADSDGYVANFVESEQIVQLNGYTASFVQVRGSIPLLWEQIVDLTYKPKFEIVKLDEAPRVAERHFLDLRKKYGSVLAVDLVNQHGSEGRLSEKFASAMQHIVNDDVRYLHFDFHRICGHVHFERLSILYDQIVDFLTKNRYLLLNEKGEKVEEQLGVVRTNCIDCLDRTNVTQSMIGRNMLECQLRRLGVFGGDETISSHPNFDENFKIMWANHGDDISIQYSGTPALKGDFVRCGQRTVQGILKDGWNALMRYYLNNFRDGTKQDAIDLLQGHYIVSVNRDMTPPSQKGGLEAIASIRLALSLVFTGFFFATMSLRQVGTDVRHLLFAVMWAALSLVIATFVRANGRIFCNRPRLHQPRR* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1378 597 Pfam SacI homology domain 66 353 IPR002013 GO:0016791
Vvi4g1378 597 ProSiteProfiles Sac phosphatase domain profile. 130 460 IPR002013 GO:0016791
Vvi4g1378 597 PANTHER PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 8 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1378 Vvi-Chr4 20669057 20711649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1378 1 596 Acyl Lipid Metabolism Gene Families AT3G51460 74.582 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1378 K21797 - vvi:100248745 1174.46