Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1375 ATGCCTTTAAGGATGTTTCTGAACAAGGTTCCTCACCATCGACCTCCATGTTTGTGCATGAAGAAGTTACAGCAGTCAAGTCAGATTCCTGGCTCCCAGCTGAAAGCTTCAATCCAAACAATTCTTTTCTACGCACACATCAGAGTCCAGGGTAGTAAGTGCATAGCCCATCAAACTTTTATGCACTACATGGTGATGTATCTCAGTATCAAAGGAAGAAAGGTTATGGGCAAGGTAGATGCTCAGATGACGGGGACATTGAGCTGGGCAGATTTTGGTGCTGAAGTGGCAGAGAATCAAAGCTCCAATTATGATCCAGAGGGTGAATATGTGAGACATTGGCTGCCCGAGCTGGCAAGAGTGCCCACTGAGTGGATTCATCACCCTTGGGATGCTCCCTTTACTGTGCTTGAACCAGCAGGGGCAGCTTGGAAGTTCATTCAGTGCATCGATGCTCATGTAACTGCTGAAAGACACATGCCAGATTTTCAAGAAAGCCGAGGTTGCCAAGAGATGGGAAAGAAGCATGAGCAAGGTGAAATTACAACCCGTGACCACAGAGAAGCTCGATGTTACTACTGTTTTGGGGCTCCATCTCCTGTCCCAACTAGGGTCGCTGATGCATTCTGA 630 0.473 MPLRMFLNKVPHHRPPCLCMKKLQQSSQIPGSQLKASIQTILFYAHIRVQGSKCIAHQTFMHYMVMYLSIKGRKVMGKVDAQMTGTLSWADFGAEVAENQSSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLEPAGAAWKFIQCIDAHVTAERHMPDFQESRGCQEMGKKHEQGEITTRDHREARCYYCFGAPSPVPTRVADAF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1375 209 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 98 143 IPR036134 -
Vvi4g1375 209 Pfam FAD binding domain of DNA photolyase 98 141 IPR005101 -
Vvi4g1375 209 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 75 182 - -
Vvi4g1375 209 PANTHER CRYPTOCHROME 97 144 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1375 Vvi-Chr4 20651984 20652613 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1375 K12119 - vvi:104880815 118.242