Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1370 ATGTCTATGGACGAAGGCAATGTTAGTGAAACGCCAGAAAGTCAAACAGCTGATGCTTTGAAACCCGAGATACAGCTTGTTGATACAAGGCTTGAGAACGATGCCAACCATGCCAAGGAGAATGGGTTGTTTGACGGCAAGCCACATGTTGATGCTACTCATGACCAGCTTGTACTAATGGTTATGGAACTCAATCTTCAGAATGAATACTTAAAGTCTCAGTTTGAGGGCTTGCAGGCTTTTCATTCAGAATCTGATGGGTCTCACCAGCAAACAAGAGAAACAGTGCAGGAAGGTGCAGCATCTGTAGATGTGAAAGGGCTCCATGAAAAGATAGAATCTTTGAGTAGTGAACTTTTTGAAGAAAAACAAACTCGAGTTGCTGCAGAGGAGGCTCTTAAGCATCTTCGAGCAGCTCACTCAGCAGCAGATGCAAAAGCTCAAGAGCTTTCCACCAAGCTTGCCGAAGCTCAACAGAAGATGGAACAAGAAATAAAAGAGCGTGATGAGAAGTACTCTGAACTTGACTCCAAGTTTAGCAGGCTTCACAAACGAGCAAAACAACGAATCCAAGATGTTCAAAAGGAAAAAGACGATCTTGAAGCCCGTCTTCGTGACATGAATGAAACAACTGAACGAGCATCATCCCAACAGTCTTCTTTGCAGCAGGAGCTCGAGCGCACACGACAACAAGCAAATGATGCATTGAGAGCCATAGATGCAGAGAGGCAACAATTACGAAGTGAAAACAATAAACTTCGAGACAAAATTGATGAATTGCGCCGTTCATTTGAACCCAAAGAGAATGCCATTGAGACCTTGCAACAGTCACTTATGGAGAAAGATCAGATGTTGGAAGACATGAAAGGGTTATTACAAGCTGCAGAAGAAAAAAGGCAAGCTTCAATAGCTGAGCTTTCTGCTAAACACCAGAAGACAGTAGAGAGTTTGGAAGCTCAACTTGCTGATGCAGTATCTGAAAGAACCAAAGCAACTGAAACGATTTCTTCTCTACAGGTGCTAATTGCTGAGAAAGAGTCAAAGATTGCAGAGATGGATGCAGCTTCAAGCGGTGAAGCAGCACGACTTAGAGCTGCCATGGAAACCGTAAAAGGGGAGCTTGTTCACCTGAAGCATGAGCATGAGAAAGAAAAAGAGAGTTGGGAAGCTGCCTCCCAGGCACTGAAAACAAAACTGGAGTTTGCTGAAAGTAACTGCATACGAGCTGAAATTGAAGCAGCAAAGATCAGAAGTCAGCTGGAATTAGAATTGTCTGTTCAAACCCAGCTGCTAAGTACAAGAGATGCTGAATTAATGGCTTCCAAGGAGGAGATTAAGCGTCTAGAAAGTGAGTTTTCTTCATACAAGGTCCGTGCTCATGCACTTCTCCAAAAGAAGGAAGCAGAGCTTGCTGCAGCAAAGGACTCTGAACAACTCAAAGCTCAAGAAGAAGCTCTAAAAGAGGCTGAAAAAGAAATACTGTTGGCAACAGAAGAAAGGGACAGGATTCTTCGAGATCTTCAGGATGCTTTGGCTAATCATGATAAAGAACTTGCAACAAGAGATGCGGCTCTTAGTAGTGCCAAGCAGCAGATTAAGAGCATAGAAAAGAAGCTTGATTCTGCTAACGCCAGATATCAATCAGAGAAAGAAGCATGGGAGATAAACCTTCAGAATTTGGAAGAAACTTGGCGATTGAGGTGCGAAGCATTGGCTGCTCAAAACGAAGTGTCTTCCGGACAAGAACTACAGAAAGAGTTAGAAGAGCTTAATCTACAGTATAAAAGATTGAAGGCAGAGCATGAATCATTCCGTGATCTGGCTGAAAGAATGATTGAAGGGAAAGACAACGAGATATCTAAACTTTTAGATGAGAATAAGACTCTTCAACAATCTCTAGAATCAAGACCAGCTGCTTACCACAATGACAATTACAACACAGCCTTCCACAAACAGGAAGCACTGAACTCAAGCACCTCTGCAGCAGAACAGCAGATTCTGCTTTTGGCAAGGCAACAGGCTCAGAGAGAGGAAGAGCTAGCACAGTCACAAAGACACATTCTAGCACTTCAAGAGGAAATTGAGGAGCTTGAACGTGAAAATCGTCTCCACAGTCAGCAGGAAGCCATGTTAAAGGAAGAATTCCGGAACATGGAAAGAACGCAGAAGAGGGAAGGTGTAGATATGACATATTTGAAAAATGTTATCTTAAAGCTTCTTGAGACAGGAGAAGTGGAGGCTCTGCTACCTGTGATTGGAATGCTTCTTCAATTCAGTCCTGAGGAGATGCAAAAGTGCCATCAAGCATACCACTCCTCAACGGAAGTTCCTCCCACTCCTGCAAGTGATGCTCCAGGATCTGCCCATTCTCTCTTCTCAAGATTCTCATTTTCATAA 2397 0.4326 MSMDEGNVSETPESQTADALKPEIQLVDTRLENDANHAKENGLFDGKPHVDATHDQLVLMVMELNLQNEYLKSQFEGLQAFHSESDGSHQQTRETVQEGAASVDVKGLHEKIESLSSELFEEKQTRVAAEEALKHLRAAHSAADAKAQELSTKLAEAQQKMEQEIKERDEKYSELDSKFSRLHKRAKQRIQDVQKEKDDLEARLRDMNETTERASSQQSSLQQELERTRQQANDALRAIDAERQQLRSENNKLRDKIDELRRSFEPKENAIETLQQSLMEKDQMLEDMKGLLQAAEEKRQASIAELSAKHQKTVESLEAQLADAVSERTKATETISSLQVLIAEKESKIAEMDAASSGEAARLRAAMETVKGELVHLKHEHEKEKESWEAASQALKTKLEFAESNCIRAEIEAAKIRSQLELELSVQTQLLSTRDAELMASKEEIKRLESEFSSYKVRAHALLQKKEAELAAAKDSEQLKAQEEALKEAEKEILLATEERDRILRDLQDALANHDKELATRDAALSSAKQQIKSIEKKLDSANARYQSEKEAWEINLQNLEETWRLRCEALAAQNEVSSGQELQKELEELNLQYKRLKAEHESFRDLAERMIEGKDNEISKLLDENKTLQQSLESRPAAYHNDNYNTAFHKQEALNSSTSAAEQQILLLARQQAQREEELAQSQRHILALQEEIEELERENRLHSQQEAMLKEEFRNMERTQKREGVDMTYLKNVILKLLETGEVEALLPVIGMLLQFSPEEMQKCHQAYHSSTEVPPTPASDAPGSAHSLFSRFSFS* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1370 798 Gene3D - 180 321 - -
Vvi4g1370 798 Coils Coil 183 263 - -
Vvi4g1370 798 Coils Coil 525 563 - -
Vvi4g1370 798 MobiDBLite consensus disorder prediction 83 98 - -
Vvi4g1370 798 Pfam GRIP domain 726 765 IPR000237 -
Vvi4g1370 798 MobiDBLite consensus disorder prediction 1 22 - -
Vvi4g1370 798 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 41 782 - -
Vvi4g1370 798 Coils Coil 278 305 - -
Vvi4g1370 798 Coils Coil 431 506 - -
Vvi4g1370 798 Coils Coil 360 419 - -
Vvi4g1370 798 MobiDBLite consensus disorder prediction 211 229 - -
Vvi4g1370 798 Coils Coil 573 632 - -
Vvi4g1370 798 ProSiteProfiles GRIP domain profile. 722 769 IPR000237 -
Vvi4g1370 798 Coils Coil 140 178 - -
Vvi4g1370 798 MobiDBLite consensus disorder prediction 83 102 - -
Vvi4g1370 798 Coils Coil 307 334 - -
Vvi4g1370 798 MobiDBLite consensus disorder prediction 1 18 - -
Vvi4g1370 798 SMART 1grip 725 769 IPR000237 -
Vvi4g1370 798 MobiDBLite consensus disorder prediction 159 173 - -
Vvi4g1370 798 MobiDBLite consensus disorder prediction 147 173 - -
Vvi4g1370 798 Coils Coil 673 714 - -
Vvi4g1370 798 MobiDBLite consensus disorder prediction 208 230 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1370 - - vvi:100266353 1391.33