Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1368 ATGTTCAGATGCCTTGTTTCCACGGTTCTCTCATGGCTTCTCTACCTCACTTGTCTCGCGAAACGGCCCATCCCTACTTCTAGAACATTCTTCCGCCTCAAAGCTCATAAGATCATAAACCTCAACGCAATGGCTCCAAGAACCCTACCGATTCTGAAGCAACTCCTATCGAAATCATCTTCCTATAACACTAACTTCATTGGGTCCAGATTTGCCCCGAAGAGATCCGTCACGTACATGCCCCGCCCCGGGGATGGGGCTCCCAGGCCAGTAACCCTAATTCCCGGGGACGGAATCGGGCCTTTGGTGACCGGCGCCGTCGAGCAGGTGATGGACGCGATGCACGCGCCGGTGTACTTTGAGCGCTACGAAGTTCACGGCGACATGAAGAAGGTGCCGGAGGAAGTGCTGGAATCGATTCGGAAGAACAAGGTGTGTTTGAAGGGCGGTTTGGCGACTCCGATGGGCGGTGGTGTGAGCTCCTTGAATGTGCAGCTGAGGAAAGAGCTGGATCTCTATGCTTCGCTTGTGAATTGCTTCAATCTTCCTGGATTGCCAACGCGGCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTATGCATACCTAAACAACAGAAAGAAAGTGACAGCTGTGCACAAAGCAAACATTATGAAGCTTGCTGATGGTCTGTTCTTAGAATCTTGTCGAGAGGTTGCAACAAAATATCCTGGAATCAAGTACAGTGAAATTATTGTGGACAATTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTGACACCTAATCTTTATGGCAATTTAGTGGCAAATACAGCAGCTGGTATTGCTGGTGGCACAGGAGTCATGCCAGGAGGCAATGTTGGGGCTGATCATGCTGTTTTTGAACAAGGTGCTTCAGCAGGGAATGTGGGACATCAGAAACTAGTAGAACAAAAGAAAGCGAATCCAGTGGCCCTTCTACTATCATCTGCCATGATGCTGAGGCATCTCCAATTTCCATCATTCGCAGATCGATTAGAAACTGCTGTGAAACGTGTAATTTCAGAGGGCAAGTACAGGACAAAAGACCTTGGGGGAGACAGTAGCACCCAAGAGATCGTTGATGCAGTCATAGCAACCCTAGATTGA 1257 0.4901 MFRCLVSTVLSWLLYLTCLAKRPIPTSRTFFRLKAHKIINLNAMAPRTLPILKQLLSKSSSYNTNFIGSRFAPKRSVTYMPRPGDGAPRPVTLIPGDGIGPLVTGAVEQVMDAMHAPVYFERYEVHGDMKKVPEEVLESIRKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYSEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGHQKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKYRTKDLGGDSSTQEIVDAVIATLD* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1368 418 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 72 417 - -
Vvi4g1368 418 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 89 417 - -
Vvi4g1368 418 SMART Iso_dh_2 90 413 IPR024084 -
Vvi4g1368 418 Pfam Isocitrate/isopropylmalate dehydrogenase 91 413 IPR024084 -
Vvi4g1368 418 Gene3D Isopropylmalate Dehydrogenase 79 417 - -
Vvi4g1368 418 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 78 417 - -
Vvi4g1368 418 NCBIfam isocitrate dehydrogenase (NAD(+)) 88 416 IPR004434 GO:0006099
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1368 Vvi-Chr4 20538587 20543054 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1368 K00030 - vvi:100242228 732.635