Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1353 ATGGCTGAGTCAAAACCTTCCGATACTAGCACGACTAGGAGGAGCTCATCATGGTCCTTTGGTCTTCTCGTCTTGATTCTTACTCCCGTTGCAGCGGCCATCTTTCTCTACCAACTCGACTCCTTTGATCCAGCTTCTCTGCCCACTCACGAGTTTTCACAGGAACCCATGCCTGTGCCGAAGCTCAACCCTCGAATGCTGCAAGGTTCTGAGATGATTGGGCAGGGGAATCTGTTGGGCCCAGAGGACATTGCCTATGACGCAAACTCACACCTAATCTACACAGGCTGTGCTGATGGCTGGGTCAAGCGAGTCACCTTGAACGAGTCGGCTGCCAACTCGGTCGTCCATAACTGGGCCTTCACCGGTGGAAGACCTCTCGGCGTCGCTCTCGGTCGAGCTGGCGAAGTTCTCGTCGCCGATGCCGAAAAGGGTCTATTGGAGATAAGTGGAGATGGTGTGATGAAACTATTGACCGATGAGGCTGAAGGCCTAAAGTTCAAACAAACGAACGCTGTAGATGTAGCTGTTGATGGTATGATTTATTTTACAGATGCTTCCTATAAATACGGGTTGATAGAGTTCATATGGGAGATATTGGAGGGTAGGCCCCATGGTAGACTACTGAGCTTTGATCCATCGACTCAAGAGACTATAGTGCTTTTACGTGATCTTTACCTTGCTAATGGTGTTGTCGTCTCACCTGATCAGACTTCTGTGGTCTTCTGCGAAACTCTCATGAAAAGGTGTATAAAATATTATATACAAGGCGAGAGAAAGGGGTCCATGGAAAAGTTCATTGATAATTTGTCTGGCATGCCTGACAACATCTTATATGATGGGGAAGGTCATTATTGGATTGCATTAGCCACGGGGACTAAAGGTCTTTGGGACTTGGCACTCAAGTATCCTTCAATTCGAAAAGTTATGGCAATCTTGGAGAGGTACATTGGAAGGCCACATATCGAGAAAAATGGTGGGATTTTGGCAGTTGATTTAGAAGGAAAACCGATTGCCCACTATTATGATCCTGAATTGTCAATGGTGTCAAGTGGGATCAAGGTTGGCAAGTATTTATATTGTGGTTCCTTTGTCAAACCCTACATTATCCGCCTTGATCTTGATCAACATGCTGCCCATACCATCACTAACCGAGTGAGTGCGGCACCAATGGCTAAGTCAAAGCCTTCAGATCCTAACACCACTAGGAAGAGCTCATCATGGTCTTTGGCTCTTCTTGTCTCCATTCTTACTCCCGTTGCAGCCGCCATCTTTCTCTACCAATTCGATTCCTTTGATCCCGCTTCTCTGCCCACTCACGTGTTTTCACAGGAACCCATGTCTGTCCCCAGGATCAACTCTCGTCTGCTGCATGAATCTGAGATGATCGGGCTTGGGAAGCTGTTGGGTCCAGAGGACATAGCCTATGATACCAACTCACACCTAATCTACACAGGCTGTGCTGATGGCTGGATTAAGAAAGTCACCTTGAACGACTCGGCTGTCAACTCGGTCGTTCATGACTGGGCCTTCACCGGTGGAAGACCTCTCGGCGTCGTTCTCGGTCGCGCCGGTGAGGTTCTCGTTGCCGACGCCGACAAGGGTCTACTGGAGATAAGTGAAGATGGTGTGGTTAAACTGTTGACAAATGAGGCTGAGGGCATAAGATTCAAACTAACGGACGCTGTGGATGTAGCTGTTGATGGTATGATTTATTTTACAGATGCTTCCTATAAATACAGTTTCAAAGATTTCATATGGGACATGTTGGAGCTTAGGCCCCATGGTAGACTACTGAGCTTTGACCCATCAACGCAAGAGACAAAAGTGCTGGTTCGTGATCTCTACTTTGCCAATGGTGTTGTCGTCTCACCTGATCAGACGTTCCTGATCTTTTGCGAATCCTTCATGAAAAGGTGTTCGAAATACTATTTACAAGGTGAGCGAAAGGGATCTATGGACAAATTCATTGATAATTTGCCTGGTATGCCCGACAACATCTTATATGATGGGGAAGGCCATTATTGGATTGGATTAGCCACGGGATACAATGATCTTTGGGACTTGGCATTCAAATATCCTTCAATTCGAAAGGTTATGGCAATCATGGAGAAGTTCATCGGGATGCCAGAAATCGAGAAAAATGGTGGGGTTTTGGCAATTGATTTGGAAGGAAAACCGATTGCTCACTATTATGATCCTAAATTGTCATTAGTGTCAAGTGGGATCAAGATTGACAAGTATTTATATTGTGGTTTTATTGTTAAACCCTACATGATTCGCCTTGATCTTGATCAACATGCTGCTCGCACCACCTTGTAA 2322 0.4608 MAESKPSDTSTTRRSSSWSFGLLVLILTPVAAAIFLYQLDSFDPASLPTHEFSQEPMPVPKLNPRMLQGSEMIGQGNLLGPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNWAFTGGRPLGVALGRAGEVLVADAEKGLLEISGDGVMKLLTDEAEGLKFKQTNAVDVAVDGMIYFTDASYKYGLIEFIWEILEGRPHGRLLSFDPSTQETIVLLRDLYLANGVVVSPDQTSVVFCETLMKRCIKYYIQGERKGSMEKFIDNLSGMPDNILYDGEGHYWIALATGTKGLWDLALKYPSIRKVMAILERYIGRPHIEKNGGILAVDLEGKPIAHYYDPELSMVSSGIKVGKYLYCGSFVKPYIIRLDLDQHAAHTITNRVSAAPMAKSKPSDPNTTRKSSSWSLALLVSILTPVAAAIFLYQFDSFDPASLPTHVFSQEPMSVPRINSRLLHESEMIGLGKLLGPEDIAYDTNSHLIYTGCADGWIKKVTLNDSAVNSVVHDWAFTGGRPLGVVLGRAGEVLVADADKGLLEISEDGVVKLLTNEAEGIRFKLTDAVDVAVDGMIYFTDASYKYSFKDFIWDMLELRPHGRLLSFDPSTQETKVLVRDLYFANGVVVSPDQTFLIFCESFMKRCSKYYLQGERKGSMDKFIDNLPGMPDNILYDGEGHYWIGLATGYNDLWDLAFKYPSIRKVMAIMEKFIGMPEIEKNGGVLAIDLEGKPIAHYYDPKLSLVSSGIKIDKYLYCGFIVKPYMIRLDLDQHAARTTL* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1353 773 FunFam Protein STRICTOSIDINE SYNTHASE-LIKE 6 457 766 - -
Vvi4g1353 773 Gene3D - 454 724 IPR011042 -
Vvi4g1353 773 Gene3D - 66 385 IPR011042 -
Vvi4g1353 773 Pfam Strictosidine synthase-like, N-terminal 67 105 - -
Vvi4g1353 773 Pfam Strictosidine synthase-like, N-terminal 457 493 - -
Vvi4g1353 773 SUPERFAMILY Calcium-dependent phosphotriesterase 67 375 - -
Vvi4g1353 773 SUPERFAMILY Calcium-dependent phosphotriesterase 456 756 - -
Vvi4g1353 773 PANTHER STRICTOSIDINE SYNTHASE-RELATED 416 755 - -
Vvi4g1353 773 FunFam Protein STRICTOSIDINE SYNTHASE-LIKE 6 67 376 - -
Vvi4g1353 773 Pfam Strictosidine synthase 171 258 IPR018119 GO:0009058|GO:0016844
Vvi4g1353 773 Pfam Strictosidine synthase 561 647 IPR018119 GO:0009058|GO:0016844
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1353 Vvi-Chr4 20407719 20425803 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1353 - - vvi:100254111 777.704