Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1351 ATGGACTGTGAAGGGTGCGAGAGGCAGGTGAGGAAGTCTGTGGAAGGAATGAAAGGAGTGACCCAAGTCGTGATCGAGCCCAAGCTGAACAAACTCACGGTCGTCGGATACGTGGAACCCAAGAAAGTGCTCCACCGTGTCAAGCATCGAACGGGGAAGAGGCCAGTCATGTGGCCTTACGTGCCGTATGATGAGATTCCCCACCCCTACGCACCAGGGGTGTATGATAGGAAGGCCCCATCCGGGTACGTGCGAAACCCCTCCCAAGATCCCCAAGTTTCCAATCTCGCACGTGCCAGTTCCACTGAGGTGAAGTACACCACAGCCTTCAGTGATGACAACCCCAACGCATGCATAATCATGTGA 366 0.5492 MDCEGCERQVRKSVEGMKGVTQVVIEPKLNKLTVVGYVEPKKVLHRVKHRTGKRPVMWPYVPYDEIPHPYAPGVYDRKAPSGYVRNPSQDPQVSNLARASSTEVKYTTAFSDDNPNACIIM* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1351 121 ProSiteProfiles Heavy-metal-associated domain profile. 1 56 IPR006121 GO:0046872
Vvi4g1351 121 Pfam Heavy-metal-associated domain 1 53 IPR006121 GO:0046872
Vvi4g1351 121 Gene3D - 1 56 - -
Vvi4g1351 121 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 118 IPR045181 GO:0046872
Vvi4g1351 121 SUPERFAMILY HMA, heavy metal-associated domain 1 53 IPR036163 GO:0046872
Vvi4g1351 121 CDD HMA 1 55 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1351 Vvi-Chr4 20391434 20391799 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1351 - - vvi:100261510 255.758