Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1349 ATGGGAGCTTTGGACTACTTCTCTAATCTCTGTGAGTGTAGGAGCCTGCATGAAAGCAGGCAGCTCCATAAGCTCAGAAAACTCAAGCAACTCCAGACGGTGGAGATAAAGGTGAAAATGGACTGTGAAGGGTGCGAGAGGCAGGTGAGGAAGTCTGTGGAAGGAATGAAAGGAGTGACCCAAGTCGTGCTCGAGCCCAAGCTGAACAAACTCACGGTCGTCGGATACGTGGAACCCAAGAAAGTGCTCCACCGTGTCAAGCATCGAACGGGGAAGAGGCCAGTCATGTGGCCTTACGTGCCGTATGATGAGATTCCCCACCCCTACGCACCAGGGGTGTATGATAGGAAGGCCCCACCCGGGTACGTGCGAAACCCCTCCCAAGATCCCCAAGTTTCCAATCTCGCACGTGCCAGTTCCACTGAGGTGAAGTACACCACAGCCTTCAGTGATGACAACCCCAACGCATGCATAATCATGTGA 483 0.5342 MGALDYFSNLCECRSLHESRQLHKLRKLKQLQTVEIKVKMDCEGCERQVRKSVEGMKGVTQVVLEPKLNKLTVVGYVEPKKVLHRVKHRTGKRPVMWPYVPYDEIPHPYAPGVYDRKAPPGYVRNPSQDPQVSNLARASSTEVKYTTAFSDDNPNACIIM* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1349 160 ProSiteProfiles Heavy-metal-associated domain profile. 31 95 IPR006121 GO:0046872
Vvi4g1349 160 SUPERFAMILY HMA, heavy metal-associated domain 31 92 IPR036163 GO:0046872
Vvi4g1349 160 Pfam Heavy-metal-associated domain 37 92 IPR006121 GO:0046872
Vvi4g1349 160 Gene3D - 28 95 - -
Vvi4g1349 160 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 33 157 IPR045181 GO:0046872
Vvi4g1349 160 CDD HMA 35 94 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1349 Vvi-Chr4 20382440 20383000 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1349 - - vvi:100256423 326.25