Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1347 ATGAAGCTGCGTAGGCAGCGTAGCAGAGGATCACACCGAGGCATTGGCAGCAGCGTAAAGTCAAACGCAACATTCCTAAATCCTAACCACAATCCGCAGAGTTACAGAGAGGAAGAGAAGAGAGCGGAGAGAAGGATGGTAGAAAGAGCTGAAGACGAAGAGAAATGGCTGGCCGCCGGGATCGCCGGCCTTCAACAGAACGCCTTTTACATGCATCGCGCTCTGGACTCGAACAATCTGAGGGACGCCCTCAAATACTCGGCTCAGATGCTTTCCGAGCTTCGTACTTCGAGGCTCTCCCCTCATAAATACTACGAACTATACATGCGAGCATTTGATGAATTGAGGAAGCTGGAGATGTTCTTCAAGGAAGAGGCAAGGCGCGGTTGCTCTATTATCGATCTCTATGAACTTGTGCAACATGCAGGCAACATATTGCCTAGACTGTATCTTCTCTGTACAGTTGGATCTGTGTACATCAAATCTAAGGAGGCTCCTGCTAAGGATGTTCTTAAGGATCTTGTGGAAATGTGCCGTGGCATCCAACATCCTGTACGTGGCCTCTTCCTAAGGAGTTACCTTTCTCAAGTCAGTAGGGATAAACTACCTGATATTGGTTCTGAATATGAAGGGGGTGCTGACACTGTCATGGATGCTGTAGAGTTTTTACTCCAAAACTTCACAGAGATGAACAAACTTTGGGTGCGGATGCAACATCAGGGACCTGCACGGGAAAAGGAGAAACGGGAAAAAGAACGGAGCGAGCTTCGTGATCTCGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAGGTTGTCAATTGTAAAGATGAGATTGCCCAATTTTATTTGATGGATTGCATAATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGAGACATTATTGGGGGCTTGCCCCCAGCTTCAGCCATCAGTTGACATCAAGACTGTGTTATCACAATTGATGGAAAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAAGTGTTACCTGAATTTTTGCAAGTGGAAGCTTTTGCCAAGCTGAGTAATGCCATATGGAAGGTCATCGAAGCACAGGTTGACATGCCTATTTTTGGAGCTGTAACTCTATATTCATCTCTTCTCACTTTTACTCTGCATGTGCACCCTGATCGGCTTGATTATGTGGATCAAGTTCTGGGAGCATGTGTTACGAAACTCTCTAGTGCTGGAAAACTTGAAGATAGCAAATCAACAAAACAGATTGTTGCACTACTAAGTGCTCCATTGGAGAAATATAATGATATTGTGACTGTCCTGAAGCTTTCAAATTATCCCCGTGTCATGGAATATCTTGACAACAGAACAAATAAAGTGATGGCAATCGTTATAATTCAAAGCATTATGAAAAACAAAACGTGTATTGCTACTGCTGAAAAGGTTGAGGCATTGTTTGAATTAATAAAAGGGCTTATCAAGGATTTGGATGGGGATCTTCATGATGAGCTTGATGATGAGGATTTCAAAGAAGAGCAGAATTCTGTTGCACGTCTTATCCAGATGCTGTATAGTGATGATCCAGATGAGATGTTACAGATCATATGTGCTGTGAGGAAGCATTTCCTGACTGGAGGACCACAACGTCTACCCTATACCATTCCCCCCCTTGTTTTTTCTTCTCTTAAGTTGATCAGGAAACTGCAAGGTCAGGATGAAAATGTTGTTGGAGAAGAGGCATCGGCTTCACCAAAGAAAATTTTCCAGCTTTTAAATCAGACCATTGAGGCTTTGTCAGCTGTTCCAGCATCTGAACTGGCACTGCGGTTGTACCTGCAATGCGCAGAGGCTGCAAATGATTGTGATTTGGAACCTGTTGCTTATGAATTTTTCACCCAAGCTTACATATTGTATGAAGAAGAAATTGCGGATTCCAAAGCACAGGTGACTGCTCTACACCTAATAGTAGGGACTCTTCAGAGGATGCATGTCTTTGGTGTTGAGAACAGGGATACCTTAACACACAAGGCCACAGGGTATTCTGCAAAGCTGTTAAAGAAGCCTGATCAGTGCAGAGCCGTTTATGCATGCTCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGGGTCCTGCTCTGCCTGAAGCGTGCTTTAAGAATTGCAAATGCTGCTCAACAAATGGCAAATGTGACACGGGGAAGCAGTGGATCTGCCACGCTCTTTGTTGAAATTTTGAACAAGTACCTCTATTTCTTTGAGAAGGGGAACCCACAAATCACTATTGCTGCAATCCAGAGCCTGATTGAATTAATTACAACTGAGATTCAAAGTGACACTATGTCACAGGATCCTGCTGCAGATGCATTCTTTGCCAGCACACTAAGGTACATCCAGTTCCAGAAACAGAAAGGTGGTGCACTGGCTGAGAAGTACGAGTCCATTAAGGTGTGA 2505 0.4423 MKLRRQRSRGSHRGIGSSVKSNATFLNPNHNPQSYREEEKRAERRMVERAEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSRLSPHKYYELYMRAFDELRKLEMFFKEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGGADTVMDAVEFLLQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLGQLEGVDLDMYKETVLPRVLEQVVNCKDEIAQFYLMDCIIQVFPDEYHLQTLETLLGACPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFAKLSNAIWKVIEAQVDMPIFGAVTLYSSLLTFTLHVHPDRLDYVDQVLGACVTKLSSAGKLEDSKSTKQIVALLSAPLEKYNDIVTVLKLSNYPRVMEYLDNRTNKVMAIVIIQSIMKNKTCIATAEKVEALFELIKGLIKDLDGDLHDELDDEDFKEEQNSVARLIQMLYSDDPDEMLQIICAVRKHFLTGGPQRLPYTIPPLVFSSLKLIRKLQGQDENVVGEEASASPKKIFQLLNQTIEALSAVPASELALRLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEIADSKAQVTALHLIVGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDSIRDGERVLLCLKRALRIANAAQQMANVTRGSSGSATLFVEILNKYLYFFEKGNPQITIAAIQSLIELITTEIQSDTMSQDPAADAFFASTLRYIQFQKQKGGALAEKYESIKV* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1347 834 Gene3D - 510 819 IPR042491 -
Vvi4g1347 834 SUPERFAMILY ARM repeat 513 790 IPR016024 -
Vvi4g1347 834 SUPERFAMILY ARM repeat 256 791 IPR016024 -
Vvi4g1347 834 MobiDBLite consensus disorder prediction 12 32 - -
Vvi4g1347 834 MobiDBLite consensus disorder prediction 1 45 - -
Vvi4g1347 834 Pfam Vacuolar protein sorting-associated protein 35 56 791 IPR005378 GO:0015031|GO:0030906|GO:0042147
Vvi4g1347 834 PIRSF Retromer_Vps35 46 834 IPR005378 GO:0015031|GO:0030906|GO:0042147
Vvi4g1347 834 PANTHER VACUOLAR SORTING PROTEIN 35 48 834 IPR005378 GO:0015031|GO:0030906|GO:0042147
Vvi4g1347 834 FunFam Vacuolar protein sorting-associated protein 35 510 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1347 Vvi-Chr4 20358251 20371243 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1347 K18468 - vvi:100248964 1515.75