Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1346 ATGAGTGCTTCAAGGTTCATCAAGTGCGTCACTGTAGGGGATGGTGCCGTTGGCAAAACTTGTCTCCTTATCTCCTATACCAGCAACACTTTCCCCACGGATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATGTTTTCATATTGGCATTCTCTCTCATCAGCAAGGCCAGCTATGAAAATGTTTCCAAGAAGTGGATTCCAGAATTGAAGCATTATGCACCTGGTGTTCCGATAGTTCTTGTTGGCACTAAGCTTGATCTTCGGGAAGACAAGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTGCCAAAACACAGCAGAATATCAAGGCAGTGTTTGATCAGGCCATTAGGGTTGTGCTCCAACCACCCAAGCAGAAGAAAAAGAAGTCAAAGTCTAAGGTCTGCTCCATATTGTGA 591 0.4687 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLREDKQFFIDHPGAVPISAAQGEELKRLIDAPAYIECSAKTQQNIKAVFDQAIRVVLQPPKQKKKKSKSKVCSIL* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1346 196 PANTHER RHO FAMILY GTPASE 4 193 IPR003578 GO:0005525|GO:0007264
Vvi4g1346 196 SMART ras_sub_4 4 180 - -
Vvi4g1346 196 ProSiteProfiles small GTPase Rab1 family profile. 2 196 - -
Vvi4g1346 196 Gene3D - 5 193 IPR027417 -
Vvi4g1346 196 NCBIfam small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Vvi4g1346 196 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Vvi4g1346 196 ProSiteProfiles small GTPase Ras family profile. 2 196 IPR001806 GO:0003924|GO:0005525
Vvi4g1346 196 SMART rab_sub_5 7 180 - -
Vvi4g1346 196 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Vvi4g1346 196 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Vvi4g1346 196 PRINTS Transforming protein P21 ras signature 30 46 - -
Vvi4g1346 196 PRINTS Transforming protein P21 ras signature 7 28 - -
Vvi4g1346 196 PRINTS Transforming protein P21 ras signature 109 122 - -
Vvi4g1346 196 PRINTS Transforming protein P21 ras signature 155 177 - -
Vvi4g1346 196 PRINTS Transforming protein P21 ras signature 47 69 - -
Vvi4g1346 196 FunFam rac-like GTP-binding protein RHO1 5 192 - -
Vvi4g1346 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Vvi4g1346 196 CDD Rop_like 6 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1346 Vvi-Chr4 20350501 20354485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1346 7 180 EF-hand Containing Proteins AT5G27540 25.287 2.70e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1346 K04392 - vvi:100243817 362.459