Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1345 ATGTGCAAGCAAAAGGATGCTCCTGATCCAGTCATCAACACATGCAAGGGGAGGAACTGTGGAGATACATTTACAGGCCCCAATAGACCAAACAAGCGCTCAGTAAGTACAGAGTATTTGGAGACCCCCCATCTCAAAGGGCAGCAGAAGATCTTGCATTCTCTGTTCATCTCTAAGAATGGTACTCTTGCAAATTACTATATGTATTATAGTGTGACAAATTTTGGTAGAACTACGTCCTCCTTTGCTACGACTTGCTACTATGATGAAGCTCCTCTTGATGAATATGGTTTGCCAAGGGAAACCAAATGGGGCCACCTCCGAGACTTGCATGCTGCTTTGAGGTTGTCTAAGAAAGCTCTTCTTTGGGGAGTTACCTCTGCCCAAAAGTTGGGAGAGGACCTAGAGGTGAAGTGCATCATGCCTGCAGGCCCGAATCTACGAAAAGCCAGGTAG 456 0.4605 MCKQKDAPDPVINTCKGRNCGDTFTGPNRPNKRSVSTEYLETPHLKGQQKILHSLFISKNGTLANYYMYYSVTNFGRTTSSFATTCYYDEAPLDEYGLPRETKWGHLRDLHAALRLSKKALLWGVTSAQKLGEDLEVKCIMPAGPNLRKAR* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1345 151 Gene3D Glycosidases 4 118 - -
Vvi4g1345 151 PANTHER BETA-GALACTOSIDASE RELATED 1 136 IPR001944 GO:0004553|GO:0005975
Vvi4g1345 151 PRINTS Glycosyl hydrolase family 35 signature 81 97 IPR001944 GO:0004553|GO:0005975
Vvi4g1345 151 PRINTS Glycosyl hydrolase family 35 signature 62 77 IPR001944 GO:0004553|GO:0005975
Vvi4g1345 151 Pfam Glycosyl hydrolases family 35 7 113 IPR031330 -
Vvi4g1345 151 SUPERFAMILY (Trans)glycosidases 1 117 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1345 Vvi-Chr4 20341501 20342566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1345 1 138 Glycoside Hydrolase AT4G35010 54.730 6.30e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1345 - - pxb:103963481 197.593