Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1344 ATGGAGCATAGGCTTGCTGGGGTACATAACGTAGCCATCCAAGGTCTCAACACTAGAACCATCGATCTGCCAAAGAATGGATGGGGACACAAGGTAGGCTTGAATGGAGACAAGCTCCATCTCTTCACACAACCTCCTTCCCAGTCAGTCTACCATGTACCGAGAGCCTTCTTGAAGACATCAGATAATCTTTTGGTTCTCTTCGAGGAAACAGGAAGAAACCCAGATGGAATAGAGATCCTAACTTTGAACAGAGATACGATCTGTTGCTACATAAGTGAACACCATCCAACACATGTGAGGTCATGGAAGAGGGAGGCAAGTGACATACAAATGTTTGTAGACGGTGTGAAGCCAAAGGCTAAGCTTTGGTGA 375 0.4587 MEHRLAGVHNVAIQGLNTRTIDLPKNGWGHKVGLNGDKLHLFTQPPSQSVYHVPRAFLKTSDNLLVLFEETGRNPDGIEILTLNRDTICCYISEHHPTHVRSWKREASDIQMFVDGVKPKAKLW* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1344 124 PANTHER BETA-GALACTOSIDASE RELATED 20 99 IPR001944 GO:0004553|GO:0005975
Vvi4g1344 124 SUPERFAMILY Galactose-binding domain-like 47 106 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1344 Vvi-Chr4 20339633 20340347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1344 1 123 Glycoside Hydrolase AT2G16730 30.526 3.09e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1344 - - tss:122662836 108.612