Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1343 ATGGACACTCCCGGTCGGAAAGCGGCGGAGCCCTCCTCAGCTGCCGCTTCCACTCACTCCCTGGCTCGCTCCTCCAAGAGACCTCGTTTCCTCGCCTCTTCTTCATCGTCGCCCATCCCCACTCGCTCCCATCGCAGTTCGCGACTCATGGAATCGGCCACTGAGGCGTCCGGTTCTAAGAAGGGCAAGGAGAAGGAATCCGAGTTGAGGTTGAAGATCAAAGAAAAGCAGAGAAGCTTAGGGTTAAGTATCGATAGCGACGATGTGCTTGGTCGTGATGACGACGACGATGACGACGACGATGATGATGATGACGAGGACGACGGTGAGGGCAGTTTTGGAATTTTGCATCAGAATTTGACCTCTGCGAGTAGTGCTCTACAAGGTCTTCTCAGGAAACTCGGTGCCGGACTCGACGAATTGTTGCCGTCGGCTGCCGTGGCCGCGACGCCGGGGAGTGGGCGGCTCAAGAAGATACTATCCTCACTGCGGGAGGAGGGCGAAGAAGGGCGTAAAATCGAGGCGTTGACGCAGCTCTGCGATTTGCTATTGATGGGGACGGAGGATTCGCTGTGTGCTTTTCCGGTTGACTCCTTCGTGCCGGTGCTTGTGGAATTGCTTAATTATGAGAGCAATGCGGACATAATGTTGCTTGCTGCTAGGGCAATTACGCATCTCTGCGACGTGTTGCCATCATCTTGCAGTGCGGTCTTGCATTACGGTGCGGTTCGGTGTTTCTGTGCCAAGCTGCTGGAAATTGAATGTATGGACTTGGCTGAACAGTCTTTGCAAGCTCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGAGAGTAGCATTGTCCACTGCTGCCAATATGTGTAAGAAACTCCCTCCAGATGCAGCCGACTTTGTGATGGAAGCTGTGCCTCTTTTGACAAACCTTCTTCAATATCAAGATTCCACGGTGTTAGAGCATTCTTCTGTCTGCTTGACTCGCATTGTGGAAGCAATTGCTTCATCCCCTGACAAGTTAGATGAACTATGCAATCATGGACTGATCGAACAAGTTACTGCACTTATTTCTACAAGTAATTCTGGAGGTGTTCAGGCATCCCTGAGCACATCTACATACACGGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTCCAGTTTCCAGCTTAATTGGAAGTGTTTCTGTTCCCCCTTCTTTGACCAGACCCCCTGATCAGATTTTCGAGATAGTGAACCTTGCAGATGAGCTTCTCCCCCCACTACCAGAAGGAACTATCTCCCACCTGAATTATTCTAGTTTTCAAATGAGAAGTTCTGCAGGAGAGAAGTCTCCTTCCAGTGGTTCTGGTAAGGAAGAAATTACTAATGGAAGTATGCCTGAGGCTTCAGCACGTGAGAAATTATTATGTGATCAACCAAAATTTCTGCAGCAGTTTGGAGTGGATCTTCTTCCTGTTTTAGTACAGGTATATGGGTCCACTGTGAATGTCCAAGTTCGCAACAAGTGTCTCTCTGTCATTGGAAAGTTAATGTACTTCTGCACAGCAGATATGATTCTATCTTTATTAAATTCAACAAACATATCGAGTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCCAGGATGTTTGTGAGAGAAGGAGTGCTTCATGCTGTAGACACACTTATATCTCATGATTTGGAAAATGTAGGTGGTGACCAAATATTGTCTGCTGAAAGGGGTAATGATTCCATATCTGGAACATCATTGCGTTCAAGGTGTTATCGACGGGGAATGGGCTACTCTAATCCAGATGGAAGTTTTCTTGAAGAACCGAAGGGTTATATTTCAGTTCACAATGGTTCATCTTCAGCATCAGTAGAAATTCCATCTAGAAATTCTAGGAGACTGGCAGTTAGTACCCGTGCTAAAGCTTTCAAACATAAATACTTCCCTTCATGCCCTGGGGAAGCTGAGGTTGGAGTTACAGATGACCTTCTACGTTTGAAAAATCTCTGTGTTGAGTTGAATTTATGTGTAAATGATCAAAATACCAAGAGAAAGGGAAAATCTAAAGCTTCAGGACCCAACTTGACCAATCCTTCTGCCAGTAAGGAGGAATACTTGATTGAAGTGATATCTTCCATACTGGCAGAGCTGGGCAGAGTAGATGCTGTATCCACCTTTGAGTTTATTAGTAGTGGAGTTGTTGCAGCTTTGCTGAACTACTTCTCTTGTGGTGCATTTTCCATGGTGAGAACATCAGAAGCTAACTTGTCTAAACTTCGACGGCTAGCATTTAGAAGGTTTAAGTCATTTATTGCAGTTGCCCTTCCTTCCAGCATTAAGGAAGGAGATGAAACTCCCCTGATTATTTTAATTCGGAATCTTCAAAATGCTTTATCCTCCTTGGAGCGATTTCCAGTTGTACTGAGCCATTCATCTAGGTCATCCAGTGGAAATGCACGTTTCTCATCCGGACTTAGTGCACTTTCTCAACCATTTAAGCTTCATCTCCGTAGAGCACAAGGAGACAAATCTCTACGTGATTACTCTTCAAATATTGTATTGATTGATCCATTGGCAAGTTTATCAGCTGTTGAAGAATTTCTTTGGCCCAGAGTTCTGCGAAGTGAATTGGGTCAGAAAAAAGACCCATCATTTGTTGAAAACTTGGAATCTGAAACCCCAACTACAGAGACTGGTGCTTCATTGTTTTCAACTTCTAATCCTGCTTGTACTTATCGCCATCCTGCTAGATCAAGATCATCAGTTGCTGTGGGAGGCACATCTGTAGAGACACCACCGCAAGGGAGAAGTGAAAACTCAATGCAAGGAAAGGGTAAAGCTCTTCAGGAGTCTGCTCAAGATGAGGAAAGAGGACCTCTGACAAGAAATATTGCATGCCGAGGAACTGCTTCAGATAAAGATTTGACCACAAAACCAGACTTTAATCCTGAGGATCGGGAAGTCAATATTTCTCCAGTTGAGATTGATGATGGTTTGGTAATTGAAGAGGATGATCTCTCAGACGATGAAGATGATGCCAATGAAGATGTGCTGAGAAATGATGTCCCATTTTGCACATCAGAGAAAGTGCATGATGTGAAATTGGGAGATCCTGTGGAGGATGGTATGGTTGCCTCTGCTGCAACTGAGGCCCAATCAAATCCTAGGTCTGGTTCAAATAATGCAGTAAATTCTGTGCATGCTTTTGGCTCAAAAGGTACAATGTCAATTGCTGCATCTGTTGCCATTGGCGGGTTAGTACCTCCAAACCGTGGAGGCATTAGGAGTGGCAGAGATAGGCAAGGAATTACCCTGACTGGTGGCAAAATTGATACTCCTAAATTAATATTTTCCTCTGGTGGAAAGCTGCTTAACAGGAACATGACCATATACCAGGCTGTTCGACGCCAGGTTGCACCAGATGAAGATGATGATGAGAGGTATGGCAACGAAGTTTTAGCCAGTGATGGAAGCAGGCTATGGCGAAATATTTATACCATCACATATCAGAGGGCAGACAACCAAGTAAATAGAATATCAACAGGAAGTTTGAACCCAACCCCATCAAAGATTTCCGAATCTAGTTGTGCTTCCAATTCCAATCCTGGCTTCCACTTGAATAACATATCACTTCTAGATAACATTTTTCAATGGGAGCTTCCTTGTGATTTAGAAAAAAGCAATCCCACTTATAATATATTAGCATTATTGCGTGTATTAGAATGTTTAAGTCAGAACATACCTCGATTGAGGGCCCAAGCCTTCTGCAATGACTTCTCAGAGGGAAAGATTCTGTGTCTTGATGATATGAGTATTGCCCACATTGAAGTTCCACCTGAGAAATTCATCAATAGCAAGATCACACCCAAATTGTCTCGACAAATCCAGGATGCCCTGGCAGTATGTGGTGGTACTCTTCCCTCATGGTGTTATCAGTTGACCAAAGCATGTCCATTCTTGTTTCCTTTTGAGACCAGGAGGCAATATTTCTATTCAACTGCTTTTGGGTTGTCTCGTGCGTTGAATTGGCTTCAACAGCAACAAGGAGCTGATGGTCAAGGCTCTGCCAGTGAAAGAGAGGTTCGTCTAGGCAGATTACAGCGTCAGAAGGTTCGTGTTTCAAGAAATCGGATTTTGGATTCTGCCAGAAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTTCTAGAAGTAGAGTATTTTGGTGAGGTTGGCACTGGATTGGGTCCAACCTTGGAGTTCTATACTCTGTTAAGTCATGATCTACAAAAAGCTGAACTGGGGATGTGGAGATCTAGTTCTACATCAGAGACACTGATGGATATTGATGATCAACCAAATGGGAAATCTGACCATTTCTCTGATGGGGAGGAACAACCTGGCTCTGTAAAAGGAAGTGGAGTTCTTGTGCAAGCTCCTCTTGGATTGTTCCCTCGTCCTTGGTCTCCTACTGCAGATGCTTCTGATGGTAGCCCGTTTGCTAAAGTGATTGAATATTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTGTGAGTGGTAATGGTTGCGATGCAACTGGTGGCTTATGTTTCCGTGGTGCCCCTGTTGAAGATCTCTGTCTAGATTTCACCCTTCCTGGCTATCCGGATTACATTCTGAAATCAGGCTATGAAAATGTCCTTGTGGATTCCGATAACTTGGATGAGTACGTATCATTGGTAGTTGATGCAACTGTCAAGTCAGGGCTAATGCATCAAATGGAAGCATTTAGAGCAGGGTTTAATCAGGTTTTTGACATTTCATCTCTGCAAATATTCTCTCCACATGAATTAGATTACTTGCTCTGTGGCCGTAGAGAATTGTGGAAGATGGAGACACTTGTTGATCACATAAAGTTTGATCATGGATACACTGCCAAGAGCCCTGCGATTATCAATTTACTTGAAATCATGGGAGAATTCACTCCTGAGCAGCAGCATGCATTCTGCCAATTCATTACTGGTGCACCTAGGCTTCCTCCTGGAGGTCTGGCAATGTTGAATCCAAAGTTGACCATTGTGAGAAAGCATTCCTCAACGATGAACCCGGCAACCAACATGATTGGACCTTCTGAATCAGCCGACGAGGATTTGCCCAGTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTTTTGATCTGTCGTAG 5580 0.4441 MDTPGRKAAEPSSAAASTHSLARSSKRPRFLASSSSSPIPTRSHRSSRLMESATEASGSKKGKEKESELRLKIKEKQRSLGLSIDSDDVLGRDDDDDDDDDDDDDEDDGEGSFGILHQNLTSASSALQGLLRKLGAGLDELLPSAAVAATPGSGRLKKILSSLREEGEEGRKIEALTQLCDLLLMGTEDSLCAFPVDSFVPVLVELLNYESNADIMLLAARAITHLCDVLPSSCSAVLHYGAVRCFCAKLLEIECMDLAEQSLQALKKISQEQPTACLRAGALMAVLSFLDFFPTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYQDSTVLEHSSVCLTRIVEAIASSPDKLDELCNHGLIEQVTALISTSNSGGVQASLSTSTYTGLIRLLSICAKGSPLGAKTLLHLEISGILKDILPVSSLIGSVSVPPSLTRPPDQIFEIVNLADELLPPLPEGTISHLNYSSFQMRSSAGEKSPSSGSGKEEITNGSMPEASAREKLLCDQPKFLQQFGVDLLPVLVQVYGSTVNVQVRNKCLSVIGKLMYFCTADMILSLLNSTNISSFLAGVLASKDPQVLIPGLQMAEILMEKLPKTFSRMFVREGVLHAVDTLISHDLENVGGDQILSAERGNDSISGTSLRSRCYRRGMGYSNPDGSFLEEPKGYISVHNGSSSASVEIPSRNSRRLAVSTRAKAFKHKYFPSCPGEAEVGVTDDLLRLKNLCVELNLCVNDQNTKRKGKSKASGPNLTNPSASKEEYLIEVISSILAELGRVDAVSTFEFISSGVVAALLNYFSCGAFSMVRTSEANLSKLRRLAFRRFKSFIAVALPSSIKEGDETPLIILIRNLQNALSSLERFPVVLSHSSRSSSGNARFSSGLSALSQPFKLHLRRAQGDKSLRDYSSNIVLIDPLASLSAVEEFLWPRVLRSELGQKKDPSFVENLESETPTTETGASLFSTSNPACTYRHPARSRSSVAVGGTSVETPPQGRSENSMQGKGKALQESAQDEERGPLTRNIACRGTASDKDLTTKPDFNPEDREVNISPVEIDDGLVIEEDDLSDDEDDANEDVLRNDVPFCTSEKVHDVKLGDPVEDGMVASAATEAQSNPRSGSNNAVNSVHAFGSKGTMSIAASVAIGGLVPPNRGGIRSGRDRQGITLTGGKIDTPKLIFSSGGKLLNRNMTIYQAVRRQVAPDEDDDERYGNEVLASDGSRLWRNIYTITYQRADNQVNRISTGSLNPTPSKISESSCASNSNPGFHLNNISLLDNIFQWELPCDLEKSNPTYNILALLRVLECLSQNIPRLRAQAFCNDFSEGKILCLDDMSIAHIEVPPEKFINSKITPKLSRQIQDALAVCGGTLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALNWLQQQQGADGQGSASEREVRLGRLQRQKVRVSRNRILDSARKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKAELGMWRSSSTSETLMDIDDQPNGKSDHFSDGEEQPGSVKGSGVLVQAPLGLFPRPWSPTADASDGSPFAKVIEYYHLLGQVMAKALQDGRLLDLPLSMAFYKLVLGQDLDLHDILSFDAELGKILQELQVLVCRKQYLDGVSGNGCDATGGLCFRGAPVEDLCLDFTLPGYPDYILKSGYENVLVDSDNLDEYVSLVVDATVKSGLMHQMEAFRAGFNQVFDISSLQIFSPHELDYLLCGRRELWKMETLVDHIKFDHGYTAKSPAIINLLEIMGEFTPEQQHAFCQFITGAPRLPPGGLAMLNPKLTIVRKHSSTMNPATNMIGPSESADEDLPSVMTCANYLKLPPYSTKDIMYKKLLYAINEGQGSFDLS* 1860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 982 1008 - -
Vvi4g1343 1859 Gene3D - 148 468 IPR011989 -
Vvi4g1343 1859 Gene3D - 508 630 IPR011989 -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 13 54 - -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 1498 1525 - -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 1505 1519 - -
Vvi4g1343 1859 FunFam E3 ubiquitin-protein ligase UPL3 1371 1619 - -
Vvi4g1343 1859 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1729 1858 - -
Vvi4g1343 1859 SUPERFAMILY Hect, E3 ligase catalytic domain 1423 1852 IPR035983 GO:0004842
Vvi4g1343 1859 SUPERFAMILY ARM repeat 75 626 IPR016024 -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 480 500 - -
Vvi4g1343 1859 SMART hect_3 1444 1859 IPR000569 GO:0004842
Vvi4g1343 1859 CDD HECTc 1430 1854 IPR000569 GO:0004842
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 1034 1053 - -
Vvi4g1343 1859 Gene3D Hect, E3 ligase catalytic domains 1370 1620 - -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 89 110 - -
Vvi4g1343 1859 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 11 1859 IPR045322 GO:0006511|GO:0061630
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 949 975 - -
Vvi4g1343 1859 ProSiteProfiles HECT domain profile. 1454 1859 IPR000569 GO:0004842
Vvi4g1343 1859 FunFam HECT ubiquitin protein ligase family protein KAK 150 463 - -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 1 115 - -
Vvi4g1343 1859 Pfam HECT-domain (ubiquitin-transferase) 1477 1859 IPR000569 GO:0004842
Vvi4g1343 1859 Gene3D Hect, E3 ligase catalytic domain 1731 1857 - -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 57 82 - -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 480 498 - -
Vvi4g1343 1859 MobiDBLite consensus disorder prediction 945 1061 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1343 Vvi-Chr4 20328659 20338746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1343 K10590 - vvi:100266125 3533.81