Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1342 ATGGCCTCTTCCGCCAATCCTTTCTCTCTTTCGCTATCCTCCGAGCTCGCTTCCAACTCTTCTCTCCACTGCGCCAACTCGTCCGAGGTCTTTCTCCGCTTCCCGAACTCTCCCGCGCCCCCCTCGCTCCGCTCTTCCTTCGTCTCGCCTATTAAGATTGAATTGAATCGAGTCGGTGTTTCTGCGTTGAAAGTGAGTCGAATCGGTTCAAGGATTTCGGCGAGTTCAACTCCGGTGATGGATCAGTCGCCGAGTCAGACGAGTCCTAGGGTTCCTACTGTTGTTGAGGTCGATTTGGGGAACCGGAGCTACCCGATCTACATCGGATCTGGATTGCTTCAACAACCCGAGCTTCTCCAGAGACATGTTCATGGGAAGAGAGCTCTTGTGGTCACCAACACCACAATTGCAGCATTATACCTTGATAAAGTAGTTGATGCTTTAACTCGTGGAAACCCAAATATTTCAGTTGAGAGTGTGATTTTGCCAGACGGTGAGAAGTACAAAAACATGGACACACTAATGAAAGTTTTTGACAAGGCAATTGAGTCACGGTTGGATAGACGTTGTACATTTGTTGCCGTTGGTGGTGGTGTTATTGGTGACATGTGTGGATTTGCTGCTGCTGCCTTCCTTCGTGGTGTTAATTTCATTCAGATTCCTACAACTGTAATGGCACAGGTGGATTCTTCAGTTGGAGGCAAAACTGGCATAAACCATCCTCTAGGAAAAAATTTGATTGGTGCTTTCTACCAACCTCAGTGTGTACTTATAGACACTGACACATTAAACACACTGCCAGAGAGGGAGTTGGCATCAGGTTTTGCTGAGGTTATTAAGTATGGGCTTATTAGGGATGCTGAATTCTTTGAGTGGCAAGAGAAGAATATGCAGGCATTAATGGCAAGGGATCCAGGTGCACTGGCTTATGCTATCAAGCGATCATGTGAAAACAAGGCTGAGGTAGTATCTTTAGATGAGAAGGAAAGTGGACTGAGGGCGACATTGAACTTGGGTCATACTTTTGGCCATGCAATAGAAACTGGGGTTGGTTATGGGCAGTGGCTCCATGGAGAAGCTGTTGCAGCTGGCATGGTCATGGCTGTCGACATGTCATACCGCCTTGGTTGGATTGATGATTCAATTGTGAAGCGAGTTCACAATATCATAAAGCAGGCTAAGCTACCCATTACCCCACCTGAAAGCATGACAGTGGAGATGTTCAAGTCAGTCATGGCGGTTGATAAGAAAGTGGCTGATGGACTGCTAAGGCTCATTCTCTTGAAAGGTCCTCTAGGCAACTGTGTTTTCACTGGTGACTATGACAGGAAGGCACTGGATGATACACTCCGGGCATTTGCCAAGTCCTGA 1371 0.4719 MASSANPFSLSLSSELASNSSLHCANSSEVFLRFPNSPAPPSLRSSFVSPIKIELNRVGVSALKVSRIGSRISASSTPVMDQSPSQTSPRVPTVVEVDLGNRSYPIYIGSGLLQQPELLQRHVHGKRALVVTNTTIAALYLDKVVDALTRGNPNISVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVAVGGGVIGDMCGFAAAAFLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLNTLPERELASGFAEVIKYGLIRDAEFFEWQEKNMQALMARDPGALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGVGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNIIKQAKLPITPPESMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLRAFAKS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1342 456 CDD DHQS 103 450 - -
Vvi4g1342 456 Gene3D - 266 456 - -
Vvi4g1342 456 NCBIfam 3-dehydroquinate synthase 104 444 IPR016037 GO:0003856|GO:0005737|GO:0009073
Vvi4g1342 456 PANTHER 3-DEHYDROQUINATE SYNTHASE 94 451 - -
Vvi4g1342 456 FunFam 3-dehydroquinate synthase 266 455 - -
Vvi4g1342 456 Gene3D - 79 265 - -
Vvi4g1342 456 FunFam 3-dehydroquinate synthase 92 265 - -
Vvi4g1342 456 Hamap 3-dehydroquinate synthase [aroB]. 92 454 IPR016037 GO:0003856|GO:0005737|GO:0009073
Vvi4g1342 456 Pfam 3-dehydroquinate synthase 160 418 IPR030960 -
Vvi4g1342 456 SUPERFAMILY Dehydroquinate synthase-like 96 449 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1342 K01735 - vvi:100266137 867.84