Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1340 ATGGTTTTGCCATTCAAGGCCAGGAGAACCCCAGACCCAGTCCCGGATGAGAGTTGTCTGTTGCGGGATCAATTGGCACAGGCATTGCAGGAGTTGGTTTCAGAGGGGCTTATTGCAGAGGAGAAATTAGATTCCTACAATGTACCATTCTATGAACCTTACACGGAGGACATAGTGACTGAAATCGAGAAGGAAGGATCCTTCAGCATCAACGGCCTTGAGATCATGGCCTTACCATGGGATAGCCCCTATGGTGGACAAAATTATGACAGGCCAACAAGTGCCCAGAAGCTAGCAAAGGCGATGAGAGCAGTGCATGAACCAATGTTGGCAAGTCATTTCGGGGCAGAAGTCATGAACCCTTTGTTTAAAAGGCCCATGGAGATCATTGCAGCAGATACAAGGGAAGTGGAGCATGTTGCTGTTCTTGTTTCCACGACCAGAAAGACTTGA 453 0.4812 MVLPFKARRTPDPVPDESCLLRDQLAQALQELVSEGLIAEEKLDSYNVPFYEPYTEDIVTEIEKEGSFSINGLEIMALPWDSPYGGQNYDRPTSAQKLAKAMRAVHEPMLASHFGAEVMNPLFKRPMEIIAADTREVEHVAVLVSTTRKT* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1340 150 Pfam SAM dependent carboxyl methyltransferase 1 144 IPR005299 GO:0008168
Vvi4g1340 150 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 139 IPR029063 -
Vvi4g1340 150 Gene3D - 10 134 IPR042086 -
Vvi4g1340 150 Gene3D Vaccinia Virus protein VP39 1 79 IPR029063 -
Vvi4g1340 150 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 132 IPR005299 GO:0008168
Vvi4g1340 150 FunFam - 49 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1340 Vvi-Chr4 20311023 20311549 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1340 K08241 K21483 vvi:100255863 242.662