Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1336 ATGGTTTCAAGGTGTAAGGCGAGGAAGAGATACATGAAGCAGTTTGTGAAGGCGAGGCAAGCCCTGTCTGCAGCCCACAGTATGTATATCAGATCCCTGCGTGGCACTGGCTCTGCTCTCCTTCAGTTTGCCACCGCCGAGACCAATCTCCACTACCACCACCACCACCACCACCACCATCTCACACCGATTCCACCCTCTCCGCCGCCACAGCAGCCCTCTCCTCCGCCTCCACCGCCGCCCATGAGTCCCAGCTCCGATACGTGGACATCCATCACAGCCTCGCCCTCTCATCTACCGCCTCCGCCTCCTCCTCCTCCTCCGCCGCCCCCGCCCCCGGCGCAGTCCAGCTGGGACTTCTGGGATCCGTTCGTGCCGTCTTCGTCAAGGTCCGTGACGGAGGAGGAGTGGGAAGCTACGACGATGGCGTCGGAAGCCCCTGCCACGACCGCCGTCTCCGCCAGCGTCACGGCTCCGCCTTCGGTGGTCAGTGGGTTCTCTAAGGACACATCGAGCGAGCTTGCTATGGTGGTGTCAAGAAACAGTAAAGATCTCGCTGAGATCGTCAAAGAGGTCGACGACTACTTTCTTAAAGCCGCCGACGCCGGTAGCGAAGTCTCATTACTCTTAGAAATTCCAAGGTCCACTTTCTCCAATCAGACTGGAGGTAAGGTTTATAGCTGTGGAAAGAGTTCGAATCCATTATGGTGTCCATGGGCTTCGAATTCGAAATTGAATGGGTTTGGGAGACTGTGTGAAGAGATGGTTGTTACTGATATAGCTGGTGGGGGTATTATCAGTGGTAGTAGCAGTCACTGTTCTACTGTGGAGAGGCTATATGCTTGGGAGAAGAAACTGTTCCAAGAGGTTAAGAATGCTGAGAGTATAAAGATAGAGCATGAGAAATGTGTAGCCCAGCTGAGGAAGTTGGAGGTAAAGAGGGCTGCTGACTATGTGAAGACTGAGAAAACCAAGAAAGAGGTTGAAAAGTTGGAGTCTAGGATGATGGTTGCATCCCAGGCCATTGAAACTACCTCTACTGAAATCATCAAATTAAGGGAGTCAGAGCTTTACCCACAACTCCTTGACATCGTAAAAGGATCGATGAGCATGTGGAGAAGCATGTACGAGTGCCACCAGGTCCAAATGCACATAGTTCAGCAGCTCAAATATCTCAATGCTATCCCATCAACTGAGCCCACATCCGAGATTCACAGGCAATCAACTCTCCAGCTCGAGCTTGAAGTCCAGCAGTGGCACTCAACCTTTTGCAGCCTAGTAAAAACCCAACGAGACTACATCCAAGCACTTACGGGCTGGCTCCGTCTTAGCCTTTTTCAGTTCAGCAAAAACCCACTATCCAAAACCAGACAGGAGTCCATGATTTACTCCCTTTGTGAAGAATGGCACCTTGCACTTGACCGGGTTCCAGACAAAGTGGCATCTGAAGGGATAAAGAGCTTGTTAACAGTAATTCATGCCATTGTAGTTCAACAAGCTGACGAGCAAAAACAAAAGAAGAGGTCAGAATCTGCATTTAAAGATCTTGAGAAGAAACTGGTTGAGCTTAGAGCACTGGAATGCAAACAATCCCCATTTTCAACGCCTGAATCATCTGCCATCACAAGAAGCAAGGACCCAATAGCAGAGAAGAGAGCAAAGGTGGCAACTTTGAGAGCAAAAGCAGAGGAGGAAAAGAGTAAGCATGAAAAGGCAGTGAGTGTAACAAGGTCTGTGACATTGAACAATTTGCAGATGGGGTTCCCACATGTCTTTCAGGCAGTGACAGGTTTTGCAAGTGTATGTACTCATGCATTTGAATCGGTTCACAACCAGGCCAAGTGTATGGACCAAGAGCTCGATGTGAAGAGGATACTGCCTTAA 1884 0.5 MVSRCKARKRYMKQFVKARQALSAAHSMYIRSLRGTGSALLQFATAETNLHYHHHHHHHHLTPIPPSPPPQQPSPPPPPPPMSPSSDTWTSITASPSHLPPPPPPPPPPPPPPAQSSWDFWDPFVPSSSRSVTEEEWEATTMASEAPATTAVSASVTAPPSVVSGFSKDTSSELAMVVSRNSKDLAEIVKEVDDYFLKAADAGSEVSLLLEIPRSTFSNQTGGKVYSCGKSSNPLWCPWASNSKLNGFGRLCEEMVVTDIAGGGIISGSSSHCSTVERLYAWEKKLFQEVKNAESIKIEHEKCVAQLRKLEVKRAADYVKTEKTKKEVEKLESRMMVASQAIETTSTEIIKLRESELYPQLLDIVKGSMSMWRSMYECHQVQMHIVQQLKYLNAIPSTEPTSEIHRQSTLQLELEVQQWHSTFCSLVKTQRDYIQALTGWLRLSLFQFSKNPLSKTRQESMIYSLCEEWHLALDRVPDKVASEGIKSLLTVIHAIVVQQADEQKQKKRSESAFKDLEKKLVELRALECKQSPFSTPESSAITRSKDPIAEKRAKVATLRAKAEEEKSKHEKAVSVTRSVTLNNLQMGFPHVFQAVTGFASVCTHAFESVHNQAKCMDQELDVKRILP* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1336 627 Pfam Protein of unknown function (DUF632) 185 493 IPR006867 -
Vvi4g1336 627 Pfam Protein of unknown function (DUF630) 2 47 IPR006868 -
Vvi4g1336 627 Coils Coil 548 568 - -
Vvi4g1336 627 PANTHER UNCHARACTERIZED 2 613 - -
Vvi4g1336 627 MobiDBLite consensus disorder prediction 96 117 - -
Vvi4g1336 627 SUPERFAMILY Formin homology 2 domain (FH2 domain) 102 185 - -
Vvi4g1336 627 Coils Coil 321 341 - -
Vvi4g1336 627 MobiDBLite consensus disorder prediction 52 169 - -
Vvi4g1336 627 MobiDBLite consensus disorder prediction 63 85 - -
Vvi4g1336 627 Coils Coil 499 526 - -
Vvi4g1336 627 MobiDBLite consensus disorder prediction 121 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1336 Vvi-Chr4 20287801 20291182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1336 183 527 Acyl Lipid Metabolism Gene Families AT2G27090 30.390 1.57e-37 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1336 - - vvi:100245548 1078.93