Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1334 ATGCAAGACATGTGGAATGTTCCCCCTGGTTTCAGGCCCAGCACATCTGCGCCTTCGTCTCCCGCAAAGCCTATTCGGGTGTCAAGAACTCGATCAGAGTCCTTTCATGTCACCCACAAAGTCCCTGTTGGCGACACTCCTTATGTGAGAGCCAAAAAGGTTCAGTTGGTTGACAAGGACCCGGAAAAGGCAATCCCGCTATTTTGGGCCGCCATTAATGCTGGAGATCGAGTGGATAGTGCGCTCAAGGACATGGCCATTGTGATGAAGCAACAGAACAGGGCTGAAGAAGCCATTGAGGCTATTAAATCGTTGCGAAGTCGTTGTTCAGATCAAGCCCAAGACTCTCTTGATAATATCCTTCTGGATCTGTACAAGAGATGCGGGAGATTGGATGATCAAATTGCACTTTTGAGGCACAAATTGTTCTTGATTCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCAGATCCCAAGGGAAAAAATTTCAGGTGTCCGTGGGACAAGAAGCGACTCGGTTACTGGGGAACTTAGGATGGGCATTGATGCAGCGGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCAATGACTCCAGATAATAACAAGATGTGCAATCTGGGTATCTGCTTGATGAAGCAAGGGAGGATTCTGGAAGCCAAAGAAACCCTTAGAAGAGTGAAACCGGCTGTTGCAGATGGACTGAGAGGTGTAGATTCCCACCTCAAAGCATTTGAGAGGGCACGGCAGATGCTGCTTGATCTTGAGTCTGAAATGTTGAATAAGGGAAGCGACCCTGTCGAACAGAGTCGGCTCTTTGATGCCTTCCTCAGTTCTTCCTCGCTTTGGCAGCCTCAGCCTTGTAAGGACCAGCACACAACGAATACAATCAAATCTCAAGATGATTTTGGGGATGAGAACTTCGACACCAACAGAGTCATGAAGGTTCTTCCTGGACAGAAGATTGCCAAACCAACGGCTGTTCATGCGAACTCACTCAACGTCGCGGCATTGCCATTCTACTCATCAAAGATGACCAAGGACCCAATTGGAAAACCACTGCAGGAGTCCCTTAAGAGAACAAGATCAGGGCTTGCTGCTAATTCGATAGGAGTGAATGAAACAGGGGCGTTCAGAAAGCCCTTAATGGAATCCATGGAACCAGAAAATAAGACTAGAAGGCAATCTCTTTCACCCGAAGAAAATGGGGACAAGTGGGCAGACTTGCTGCCAGACAGCAAGGAGTTTGAAGCGGCTCTTATTGCTGCAGTTTTGGGTTCAGCCACTGAAACAGGGAAGAAGACTGTGGAGACTGGAAACAGTTCTGGAATTTTACAGAATAAGATTGAGAGTAGGCTTAAAGTCTTTCAAGACATAACACTCTCAATGAGCCCAAGAGCCTAA 1425 0.4751 MQDMWNVPPGFRPSTSAPSSPAKPIRVSRTRSESFHVTHKVPVGDTPYVRAKKVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQDSLDNILLDLYKRCGRLDDQIALLRHKLFLIQQGMAFNGKRTKTARSQGKKFQVSVGQEATRLLGNLGWALMQRNNYIEAEDAYRRALSMTPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGLRGVDSHLKAFERARQMLLDLESEMLNKGSDPVEQSRLFDAFLSSSSLWQPQPCKDQHTTNTIKSQDDFGDENFDTNRVMKVLPGQKIAKPTAVHANSLNVAALPFYSSKMTKDPIGKPLQESLKRTRSGLAANSIGVNETGAFRKPLMESMEPENKTRRQSLSPEENGDKWADLLPDSKEFEAALIAAVLGSATETGKKTVETGNSSGILQNKIESRLKVFQDITLSMSPRA* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1334 474 Pfam Tetratricopeptide repeat 177 208 IPR013105 -
Vvi4g1334 474 SMART tpr_5 175 208 IPR019734 GO:0005515
Vvi4g1334 474 Gene3D Tetratricopeptide repeat domain 53 237 IPR011990 GO:0005515
Vvi4g1334 474 PANTHER PROTEIN POLLENLESS 3-LIKE 2 15 468 IPR044961 -
Vvi4g1334 474 MobiDBLite consensus disorder prediction 383 414 - -
Vvi4g1334 474 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g1334 474 MobiDBLite consensus disorder prediction 391 414 - -
Vvi4g1334 474 SUPERFAMILY TPR-like 59 234 IPR011990 GO:0005515
Vvi4g1334 474 Coils Coil 88 108 - -
Vvi4g1334 474 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Vvi4g1334 474 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1334 Vvi-Chr4 20279074 20280781 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1334 - - vvi:104879120 926.776